Evidence map›Paper›PMID 38110951›Full record

ArticleCell communication and signaling : CCS2023

Generation of novel in vitro flexible kidney organoid model to investigate the role of extracellular vesicles in induction of nephrogenesis.

Naveed Ahmad, Anatoliy Samoylenko, Ichrak Abene, Eslam Abdelrady, Artem Zhyvolozhnyi, Olha Makieieva, Geneviève Bart, Ilya Skovorodkin, Seppo J Vainio

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Cell communication and signaling : CCS, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Naveed AhmadLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland. naveed.ahmad@oulu.fi.
Anatoliy SamoylenkoLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland.
Ichrak AbeneLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland.
Eslam AbdelradyLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland.
Artem ZhyvolozhnyiLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland.
Olha MakieievaLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland.
Geneviève BartLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland.
Ilya SkovorodkinLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland.
Seppo J VainioLaboratory of Developmental Biology, Faculty of Biochemistry and Molecular Medicine, University of Oulu, 90220, Oulu, Finland. seppo.vainio@oulu.fi.
University of Oulu · FI

Funding

Biocenter Oulu (BCO), University of Oulu 315030
6 · The paper itself

Abstract

backgroundDuring kidney organogenesis, metanephric mesenchyme (MM) and ureteric bud (UB) interact reciprocally to form nephrons. Signaling stimuli involved in these interactions include Wnts, growth factors and nano/micro particles. How UB and MM are interacting is not completely understood. Our study investigated the signaling and communication via extracellular vesicles (EVs) during nephrogenesis. Embryonic day (E) 11.5 mouse kidney UB and MM produce very low number of primary cells that have limited ability for proliferation in culture. Such limitations obstruct studying the role of EVs in induction of nephrogenesis. These issues necessitate to generate a nephrogenesis model allowing to study the comprehensive role of EVs during nephrogenesis.

resultsOur study generated a UB derived cell line-based in vitro flexible model of nephrogenesis allowing expandable cell culturing, in addition to performing characterization, tracking and blocking of EVs. UB cell line aggregation with E11.5 MM cells induced the formation of segmented nephrons. Most efficient nephrogenesis was obtained by the co-culturing of 30,000 cells of UB cell line with 50,000 MM cells. Results revealed that both the UB and the MM secrete EVs during nephrogenesis. UB cell line derived EVs were characterized by their size, morphology and expression of markers (CD63, TSG101, CD9 and CD81). Furthermore, proteomics data of UB cell line-derived EVs revealed large number of proteins involved in nephrogenesis-related signaling pathways. Palmitoylated GFP-tagged EVs from UB cell line were found in the nephron formation zone in the developing kidney organoid. UB cell line derived EVs did not induce nephrogenesis in MM cells but significantly contributed to the survival and nephrogenesis-competency of MM cells. The secretion of EVs was continuously inhibited during the ongoing nephrogenesis by the knockdown of RalA and RalB gene expression using short hairpin RNAs. This inhibition partially impaired the ability of UB cell line to induce nephrogenesis. Moreover, impaired nephrogenesis was partially rescued by the addition of EVs.

conclusionOur study established a novel in vitro flexible model of nephrogenesis that solved the limitations of primary embryonic kidney cells and mouse embryonic stem cell kidney organoids for the EV research. EVs were found to be an integral part of nephrogenesis process. Video Abstract.

Indexed as

Extracellular VesiclesKidneyAnimalsMiceNephronsOrganogenesisOrganoidsEVsMMNephrogenesisRalARalBUBUB cell lineWnt

Identifiers

PMID38110951
PMCPMC10726558
OpenAlexW4389894057

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.