Evidence map›Paper›PMID 38110637›Full record

ArticleNature methods2024

Serial Lift-Out: sampling the molecular anatomy of whole organisms.

Oda Helene Schiøtz, Christoph J O Kaiser, Sven Klumpe, Dustin R Morado, Matthias Poege, Jonathan Schneider, Florian Beck, David P Klebl, Christopher Thompson, Jürgen M Plitzko

Abstract read
In one paragraph

Article in Nature methods, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed.

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  13. Cryogenic electron tomography by the numbers: Charting underexplored lineages in structural cell biology.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  15. Review
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  18. Cryogenic light microscopy of vitrified samples with angstrom precision.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Oda Helene Schiøtz *Research Group CryoEM Technology, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0009-0008-3301-8270
Christoph J O Kaiser *Research Group CryoEM Technology, Max Planck Institute of Biochemistry, Martinsried, Germany.ORCID http://orcid.org/0000-0002-8481-6845
Sven Klumpe *Research Group CryoEM Technology, Max Planck Institute of Biochemistry, Martinsried, Germany. klumpe@biochem.mpg.de.ORCID http://orcid.org/0000-0002-8350-6503
Dustin R MoradoDepartment of Cell and Virus Structure, Max Planck Institute of Biochemistry, Martinsried, Germany.
Matthias PoegeDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.
Jonathan SchneiderDepartment of Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany.
Florian BeckResearch Group CryoEM Technology, Max Planck Institute of Biochemistry, Martinsried, Germany.
David P KleblDepartment of Cell and Virus Structure, Max Planck Institute of Biochemistry, Martinsried, Germany.
Christopher ThompsonMaterials and Structural Analysis, Thermo Fisher Scientific, Eindhoven, the Netherlands.
Jürgen M PlitzkoResearch Group CryoEM Technology, Max Planck Institute of Biochemistry, Martinsried, Germany. plitzko@biochem.mpg.de.ORCID http://orcid.org/0000-0002-6402-8315

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cryo-focused ion beam milling of frozen-hydrated cells and subsequent cryo-electron tomography (cryo-ET) has enabled the structural elucidation of macromolecular complexes directly inside cells. Application of the technique to multicellular organisms and tissues, however, is still limited by sample preparation. While high-pressure freezing enables the vitrification of thicker samples, it prolongs subsequent preparation due to increased thinning times and the need for extraction procedures. Additionally, thinning removes large portions of the specimen, restricting the imageable volume to the thickness of the final lamella, typically <300 nm. Here we introduce Serial Lift-Out, an enhanced lift-out technique that increases throughput and obtainable contextual information by preparing multiple sections from single transfers. We apply Serial Lift-Out to Caenorhabditis elegans L1 larvae, yielding a cryo-ET dataset sampling the worm's anterior-posterior axis, and resolve its ribosome structure to 7 Å and a subregion of the 11-protofilament microtubule to 13 Å, illustrating how Serial Lift-Out enables the study of multicellular molecular anatomy.

Indexed as

Caenorhabditis elegansCryoelectron MicroscopyElectron Microscope TomographyAnimalsLarvaMicrotubulesRibosomesSpecimen Handling

Identifiers

PMID38110637
PMCPMC11399102

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.