Evidence map›Paper›PMID 38110438›Full record

ArticleScientific reports2023

Transcriptional profiles of pulmonary artery endothelial cells in pulmonary hypertension.

Navneet Singh, Carsten Eickhoff, Augusto Garcia-Agundez, Paul Bertone, Sunita S Paudel, Dhananjay T Tambe, Leslie A Litzky, Katherine Cox-Flaherty, James R Klinger, Sean F Monaghan and 7 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. A Cross-Species and Sex-Specific Meta-Analysis of Transcriptomic Studies of Pulmonary Hypertension.American journal of respiratory cell and molecular biology · 2025
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Endothelial Heterogeneity in Pulmonary Hypertension.Arteriosclerosis, thrombosis, and vascular biology · 2026
    Review
  8. Article
  9. Pulmonary Hypertension Promotes Neuroinflammation and Neurodegeneration.bioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Lung endothelial cell heterogeneity in health and pulmonary vascular disease.American journal of physiology. Lung cellular and molecular physiology · 2025
    Review
  12. Article
  13. Article
  14. Review
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 1 country.

Navneet SinghDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.
Carsten EickhoffDepartment of Computer Science, Brown University, Providence, RI, USA.
Augusto Garcia-AgundezBrown Center for Biomedical Informatics, Brown University, Providence, RI, USA.
Paul BertoneDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.
Sunita S PaudelDepartment of Physiology and Cell Biology, College of Medicine, University of South Alabama, Mobile, AL, USA.
Dhananjay T TambeCenter for Lung Biology, College of Medicine, University of South Alabama, Mobile, AL, USA.
Leslie A LitzkyDepartment of Pathology and Laboratory Medicine, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Katherine Cox-FlahertyDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.
James R KlingerDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.
Sean F MonaghanDepartment of Surgery, Alpert Medical School of Brown University, Providence, RI, USA.
Christopher J MullinDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.
Mandy PereiraLifespan Hospital System, Providence, RI, USA.
Thomas WalshLifespan Hospital System, Providence, RI, USA.
Mary WhittenhallDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.
Troy StevensDepartment of Physiology and Cell Biology, College of Medicine, University of South Alabama, Mobile, AL, USA.
Elizabeth O HarringtonDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA.
Corey E VentetuoloDepartment of Medicine, Alpert Medical School of Brown University, Providence, RI, USA. corey_ventetuolo@brown.edu.
Brown University · USUniversity of South Alabama · USLifespan · USProvidence College · USUniversity of Pennsylvania · US

Funding

T-type Calcium Channels and von Willebrand Factor ReleaseP01HL066299 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI LEAVESLEY, SILAS JOSIAH · 2001 to 2022
$34.6M
Uncoupling of IL-1 beta and VEGF-A Crosstalk Contributes to Impaired Arteriogenesis Response to Ischemia in Chronic Diabetes MellitusP20GM103652 · NIGMS · OCEAN STATE RESEARCH INSTITUTE, INC. · PI CHOUDHARY, GAURAV, HARRINGTON, ELIZABETH O · 2013 to 2022
$21.3M
Pilot Projects ProgramP30GM149398 · NIGMS · OCEAN STATE RESEARCH INSTITUTE, INC. · PI Peng Zhang · 2023 to 2026
$5.5M
Brown Respiratory Research Training ProgramT32HL134625 · NHLBI · BROWN UNIVERSITY · PI Elizabeth O Harrington, Sharon Irene Smith Rounds · 2017 to 2026
$5.1M
Effects of DHEA in Pulmonary Hypertension (DiPH)R01HL141268 · NHLBI · RHODE ISLAND HOSPITAL · PI VENTETUOLO, COREY E · 2018 to 2022
$3.7M
Improving Sepsis Care with Deep RNA Sequencing DataR35GM142638 · NIGMS · RHODE ISLAND HOSPITAL · PI Sean Farrell Monaghan · 2021 to 2026
$2.6M
Soluble adenylyl cyclases in lung endothelial tauopathyR01HL167997 · NHLBI · UNIVERSITY OF SOUTH ALABAMA · PI Troy Stevens · 2023 to 2026
$1.9M
Short-Term Training Program to Increase Diversity in Health-Related ResearchR25HL088992 · NHLBI · BROWN UNIVERSITY · PI ABID, RUHUL, DIAZ, JOSEPH A · 2007 to 2024
$1.9M
NHLBI NIH HHS P01 HL066299NHLBI NIH HHS R01 HL141268NHLBI NIH HHS R01HL141268NHLBI NIH HHS R01 HL167997NHLBI NIH HHS R25 HL088992NHLBI NIH HHS T32 HL134625NHLBI NIH HHS T32HL134625NIGMS NIH HHS P20 GM103652NIGMS NIH HHS P20GM103652NIGMS NIH HHS P30 GM149398NIGMS NIH HHS R35 GM142638
6 · The paper itself

Abstract

Pulmonary arterial hypertension (PAH) is characterized by endothelial cell (EC) dysfunction. There are no data from living patients to inform whether differential gene expression of pulmonary artery ECs (PAECs) can discern disease subtypes, progression and pathogenesis. We aimed to further validate our previously described method to propagate ECs from right heart catheter (RHC) balloon tips and to perform additional PAEC phenotyping. We performed bulk RNA sequencing of PAECs from RHC balloons. Using unsupervised dimensionality reduction and clustering we compared transcriptional signatures from PAH to controls and other forms of pulmonary hypertension. Select PAEC samples underwent single cell and population growth characterization and anoikis quantification. Fifty-four specimens were analyzed from 49 subjects. The transcriptome appeared stable over limited passages. Six genes involved in sex steroid signaling, metabolism, and oncogenesis were significantly upregulated in PAH subjects as compared to controls. Genes regulating BMP and Wnt signaling, oxidative stress and cellular metabolism were differentially expressed in PAH subjects. Changes in gene expression tracked with clinical events in PAH subjects with serial samples over time. Functional assays demonstrated enhanced replication competency and anoikis resistance. Our findings recapitulate fundamental biological processes of PAH and provide new evidence of a cancer-like phenotype in ECs from the central vasculature of PAH patients. This "cell biopsy" method may provide insight into patient and lung EC heterogeneity to advance precision medicine approaches in PAH.

Indexed as

Hypertension, PulmonaryPulmonary Arterial HypertensionVascular DiseasesEndothelial CellsFamilial Primary Pulmonary HypertensionHumansPulmonary ArteryWnt Signaling Pathway

Identifiers

PMID38110438
PMCPMC10728171
OpenAlexW4389883575

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.