Evidence map›Paper›PMID 38109320›Full record

ArticleNucleic acids research2024

Nuclear localization of Argonaute 2 is affected by cell density and may relieve repression by microRNAs.

Krystal C Johnson, Audrius Kilikevicius, Cristina Hofman, Jiaxin Hu, Yang Liu, Selina Aguilar, Jon Graswich, Yi Han, Tao Wang, Jill M Westcott and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. The roles of subcellular Argonaute 2 in cardiovascular diseases.Journal of translational internal medicine · 2025
    Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Review
  15. Article
  16. The miRNomics of antiretroviral therapy-induced obesity.Functional & integrative genomics · 2025
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Krystal C JohnsonUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.ORCID 0000-0002-1010-2129
Audrius KilikeviciusUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.
Cristina HofmanUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.
Jiaxin HuUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.
Yang LiuUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.
Selina AguilarUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.
Jon GraswichUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.
Yi HanUT Southwestern Medical Center, Peter O'Donnell Jr. School of Public Health, Dallas, TX 75235, USA.
Tao WangUT Southwestern Medical Center, Peter O'Donnell Jr. School of Public Health, Dallas, TX 75235, USA.
Jill M WestcottUT Southwestern Medical Center, Harold C. Simmons Comprehensive Cancer Center, Department of Surgery, Dallas, TX 75235, USA.
Rolf A BrekkenUT Southwestern Medical Center, Harold C. Simmons Comprehensive Cancer Center, Department of Surgery, Dallas, TX 75235, USA.
Lan PengUT Southwestern Medical Center, Harold C. Simmons Comprehensive Cancer Center, Department of Pathology, Dallas, TX 75235, USA.
Georgios KaragkounisUT Southwestern Medical Center, Harold C. Simmons Comprehensive Cancer Center, Department of Surgery, Dallas, TX 75235, USA.
David R CoreyUT Southwestern Medical Center, Departments of Pharmacology and Biochemistry, Dallas, TX 75235, USA.ORCID 0000-0001-8973-493X
Southwestern Medical Center · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
UT Southwestern NORCP30DK127984 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI JAY D. HORTON · 2022 to 2026
$7.4M
Recognition of Cellular Targets by single and double-stranded nucleic acidsR35GM118103 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI David R Corey · 2016 to 2026
$5.7M
Targeted inhibition in stromal TGFβ activity in pancreatic cancerR01CA243577 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI BREKKEN, ROLF A · 2020 to 2023
$1.7M
Spinning Disk Confocal for UT SouthwesternS10OD028630 · OD · UT SOUTHWESTERN MEDICAL CENTER · PI LUBY-PHELPS, KATHERINE J · 2020 to 2020
$600k
Defining the Boundaries of RNAi in a cellF31GM137591 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI JOHNSON, KRYSTAL COURTNEY · 2020 to 2022
$95k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA142543NCI NIH HHS R01 CA243577NIDDK NIH HHS P30 DK127984NIGMS NIH HHS F31 GM137591NIGMS NIH HHS R35 GM118103NIH HHS 1F31GM137591NIH HHS S10 OD028630
6 · The paper itself

Abstract

Argonaute protein is associated with post-transcriptional control of cytoplasmic gene expression through miRNA-induced silencing complexes (miRISC). Specific cellular and environmental conditions can trigger AGO protein to accumulate in the nucleus. Localization of AGO is central to understanding miRNA action, yet the consequences of AGO being in the nucleus are undefined. We show nuclear enrichment of AGO2 in HCT116 cells grown in two-dimensional culture to high density, HCT116 cells grown in three-dimensional tumor spheroid culture, and human colon tumors. The shift in localization of AGO2 from cytoplasm to nucleus de-represses cytoplasmic AGO2-eCLIP targets that were candidates for canonical regulation by miRISC. Constitutive nuclear localization of AGO2 using an engineered nuclear localization signal increases cell migration. Critical RNAi factors also affect the localization of AGO2. Knocking out an enzyme essential for miRNA biogenesis, DROSHA, depletes mature miRNAs and restricts AGO2 localization to the cytoplasm, while knocking out the miRISC scaffolding protein, TNRC6, results in nuclear localization of AGO2. These data suggest that AGO2 localization and miRNA activity can be regulated depending on environmental conditions, expression of mature miRNAs, and expression of miRISC cofactors. Localization and expression of core miRISC protein machinery should be considered when investigating the roles of miRNAs.

Indexed as

Argonaute ProteinsMicroRNAsCell CountCell NucleusCytoplasmHumansRNA InterferenceAGO2 protein, humanArgonaute ProteinsMicroRNAs

Identifiers

PMID38109320
PMCPMC10899759
OpenAlexW4389921162

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.