Evidence map›Paper›PMID 38106456›Full record

ArticleArXiv2023

Unsupervised learning on spontaneous retinal activity leads to efficient neural representation geometry.

Andrew Ligeralde, Yilun Kuang, Thomas Edward Yerxa, Miah N Pitcher, Marla Feller, SueYeon Chung

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In one paragraph

Article in ArXiv, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Andrew LigeraldeBiophysics Graduate Group, University of California, Berkeley.
Yilun KuangCenter for Computational Neuroscience, Flatiron Institute.
Thomas Edward YerxaCenter for Computational Neuroscience, Flatiron Institute.
Miah N PitcherHelen Wills Neuroscience Institute, University of California, Berkeley.
Marla FellerHelen Wills Neuroscience Institute, University of California, Berkeley.
SueYeon ChungCenter for Computational Neuroscience, Flatiron Institute.

Funding

UC Berkeley Vision Science COREP30EY003176 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI RICHARD H KRAMER · 1985 to 2026
$16.4M
The Function of Neural Activity in Developing RetinaR01EY013528 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Marla Feller · 2002 to 2026
$8.1M
Development of direction selectivity in the retinaR01EY019498 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Marla Feller · 2009 to 2026
$6.6M
NEI NIH HHS P30 EY003176NEI NIH HHS R01 EY013528NEI NIH HHS R01 EY019498
6 · The paper itself

Abstract

Prior to the onset of vision, neurons in the developing mammalian retina spontaneously fire in correlated activity patterns known as retinal waves. Experimental evidence suggests that retinal waves strongly influence the emergence of sensory representations before visual experience. We aim to model this early stage of functional development by using movies of neurally active developing retinas as pre-training data for neural networks. Specifically, we pre-train a ResNet-18 with an unsupervised contrastive learning objective (SimCLR) on both simulated and experimentally-obtained movies of retinal waves, then evaluate its performance on image classification tasks. We find that pre-training on retinal waves significantly improves performance on tasks that test object invariance to spatial translation, while slightly improving performance on more complex tasks like image classification. Notably, these performance boosts are realized on held-out natural images even though the pre-training procedure does not include any natural image data. We then propose a geometrical explanation for the increase in network performance, namely that the spatiotemporal characteristics of retinal waves facilitate the formation of separable feature representations. In particular, we demonstrate that networks pre-trained on retinal waves are more effective at separating image manifolds than randomly initialized networks, especially for manifolds defined by sets of spatial translations. These findings indicate that the broad spatiotemporal properties of retinal waves prepare networks for higher order feature extraction.

Identifiers

PMID38106456
PMCPMC10723543

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.