Evidence map›Paper›PMID 38104959›Full record

ArticleArchives of biochemistry and biophysics2024

Ligand bound structure of a 6-hydroxynicotinic acid 3-monooxygenase provides mechanistic insights.

Zachary R Turlington, Sofia Vaz Ferreira de Macedo, Kay Perry, Sam L Belsky, Jennifer A Faust, Mark J Snider, Katherine A Hicks

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Zachary R TurlingtonDepartment of Chemistry, State University of New York at Cortland, Cortland, NY, 13045, United States.
Sofia Vaz Ferreira de MacedoDepartment of Chemistry, State University of New York at Cortland, Cortland, NY, 13045, United States.
Kay PerryNE-CAT and Department of Chemistry and Chemical Biology, Cornell University, Argonne National Laboratory, Argonne, IL, United States.
Sam L BelskyDepartment of Chemistry, The College of Wooster, Wooster, OH, 44691, United States.
Jennifer A FaustDepartment of Chemistry, The College of Wooster, Wooster, OH, 44691, United States.
Mark J SniderDepartment of Chemistry, The College of Wooster, Wooster, OH, 44691, United States.
Katherine A HicksDepartment of Chemistry, State University of New York at Cortland, Cortland, NY, 13045, United States. Electronic address: katherine.hicks@cortland.edu.
College of Wooster · USSUNY Cortland · USArgonne National Laboratory · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI Nozomi Ando, J Christopher Fromme · 2018 to 2026
$34.2M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
NIGMS NIH HHS P30 GM124165NIH HHS S10 OD021527
6 · The paper itself

Abstract

6-Hydroxynicotinic acid 3-monooxygenase (NicC) is a bacterial enzyme involved in the degradation of nicotinic acid. This enzyme is a Class A flavin-dependent monooxygenase that catalyzes a unique decarboxylative hydroxylation. The unliganded structure of this enzyme has previously been reported and studied using steady- and transient-state kinetics to support a comprehensive kinetic mechanism. Here we report the crystal structure of the H47Q NicC variant in both a ligand-bound (solved to 2.17 Å resolution) and unliganded (1.51 Å resolution) form. Interestingly, in the liganded form, H47Q NicC is bound to 2-mercaptopyridine (2-MP), a contaminant present in the commercial stock of 6-mercaptopyridine-3-carboxylic acid(6-MNA), a substrate analogue. 2-MP binds weakly to H47Q NicC and is not a substrate for the enzyme. Based on kinetic and thermodynamic characterization, we have fortuitously captured a catalytically inactive H47Q NicC•2-MP complex in our crystal structure. This complex reveals interesting mechanistic details about the reaction catalyzed by 6-hydroxynicotinic acid 3-monooxygenase.

Indexed as

Flavin-Adenine DinucleotideMixed Function OxygenasesKineticsLigands6-hydroxynicotinate 3-monooxygenaseFlavin-Adenine DinucleotideLigandsMixed Function OxygenasesBacterial nicotinic acid metabolismFlavin adenine dinucleotide (FAD)Flavin monooxygenaseProtein structure

Identifiers

PMID38104959
PMCPMC11726978
OpenAlexW4389815522

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.