Evidence map›Paper›PMID 38104184›Full record

ArticleCommunications biology2023

The co-crystal structure of Cbl-b and a small-molecule inhibitor reveals the mechanism of Cbl-b inhibition.

Serah W Kimani, Sumera Perveen, Magdalena Szewezyk, Hong Zeng, Aiping Dong, Fengling Li, Pegah Ghiabi, Yanjun Li, Irene Chau, Cheryl H Arrowsmith and 4 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 30 citations in OpenAlex.

  1. Trial
  2. Article
  3. Optimization andACS medicinal chemistry letters · 2026
    Article
  4. Article
  5. Review
  6. A c-Cbl/Cbl-b antagonist inhibits EGFR ubiquitylation and sustains EGFR phosphorylation to enhance corneal re-epithelialization.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Locking CBL TKBD in its native conformation presents a novel therapeutic opportunity in mutant CBL-dependent leukemia.Molecular therapy : the journal of the American Society of Gene Therapy · 2025
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Serah W KimaniStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-6960-3833
Sumera PerveenStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-8898-9540
Magdalena SzewezykStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.
Hong ZengStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.
Aiping DongStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.
Fengling LiStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.
Pegah GhiabiStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.
Yanjun LiStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-9512-5265
Irene ChauStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.
Cheryl H ArrowsmithStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-4971-3250
Dalia Barsyte-LovejoyStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada.ORCID 0000-0002-6560-9621
Vijayaratnam SanthakumarStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada. santha.santhakumar@utoronto.ca.ORCID 0000-0002-7001-557X
Masoud VedadiDepartment of Pharmacology and Toxicology, University of Toronto, Toronto, ON, Canada.
Levon HalabelianStructural Genomics Consortium, University of Toronto, Toronto, ON, Canada. l.halabelian@utoronto.ca.ORCID 0000-0003-4361-3619
University of Toronto · CAUniversity Health Network · CAOntario Institute for Cancer Research · CA

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
NIGMS NIH HHS P30 GM124165
6 · The paper itself

Abstract

Cbl-b is a RING-type E3 ubiquitin ligase that is expressed in several immune cell lineages, where it negatively regulates the activity of immune cells. Cbl-b has specifically been identified as an attractive target for cancer immunotherapy due to its role in promoting an immunosuppressive tumor environment. A Cbl-b inhibitor, Nx-1607, is currently in phase I clinical trials for advanced solid tumor malignancies. Using a suite of biophysical and cellular assays, we confirm potent binding of C7683 (an analogue of Nx-1607) to the full-length Cbl-b and its N-terminal fragment containing the TKBD-LHR-RING domains. To further elucidate its mechanism of inhibition, we determined the co-crystal structure of Cbl-b with C7683, revealing the compound's interaction with both the TKBD and LHR, but not the RING domain. Here, we provide structural insights into a novel mechanism of Cbl-b inhibition by a small-molecule inhibitor that locks the protein in an inactive conformation by acting as an intramolecular glue.

Indexed as

NeoplasmsUbiquitin-Protein LigasesHumansMolecular ConformationPhosphorylationProtein BindingUbiquitin-Protein Ligases

Identifiers

PMID38104184
PMCPMC10725504
OpenAlexW4389849446

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.