Evidence map›Paper›PMID 38103095›Full record

ArticleGeroScience2024

A machine learning approach for quantifying age-related histological changes in the mouse kidney.

Susan Sheehan, Seamus Mawe, Mandy Chen, Jenna Klug, Warren Ladiges, Ron Korstanje, J Matthew Mahoney

Abstract read
In one paragraph

Article in GeroScience, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Susan SheehanThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Seamus MaweThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Mandy ChenThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
Jenna KlugDepartment of Comparative Medicine, School of Medicine, University of Washington, Seattle, WA, USA.
Warren LadigesDepartment of Comparative Medicine, School of Medicine, University of Washington, Seattle, WA, USA.
Ron KorstanjeThe Jackson Laboratory, Bar Harbor, ME, 04609, USA.
J Matthew MahoneyThe Jackson Laboratory, Bar Harbor, ME, 04609, USA. matt.mahoney@jax.org.ORCID 0000-0003-1425-5939

Funding

Interventions That Retard Mammalian AgingU01AG022308 · NIA · JACKSON LABORATORY · PI Ronny Korstanje · 2003 to 2026
$30.5M
Translational CoreP30AG038070 · NIA · JACKSON LABORATORY · PI John Matthew Mahoney · 2010 to 2026
$19.3M
Physical resilience is a predictor of healthy aging in miceR01AG057381 · NIA · UNIVERSITY OF WASHINGTON · PI Warren C LADIGES · 2017 to 2026
$4.6M
Causal connections between axon guidance proteins and early progressive kidney function decline in diabetesR01DK131061 · NIDDK · JOSLIN DIABETES CENTER · PI KROLEWSKI, ANDRZEJ S · 2022 to 2025
$2.7M
Identification of Kidney Disease Modifier Genes in Mouse and Human Alport SyndromeR01DK131019 · NIDDK · JACKSON LABORATORY · PI KORSTANJE, RONNY · 2022 to 2025
$1.5M
Integrating high-throughput histology with systems genetics through causal graphical modelsR01GM141309 · NIGMS · JACKSON LABORATORY · PI MAHONEY, JOHN MATTHEW · 2022 to 2025
$1.5M
Pathology of Aging Research NetworkR24AG047115 · NIA · UNIVERSITY OF WASHINGTON · PI LADIGES, WARREN C · 2014 to 2016
$1.1M
Slowing aging by multiplexing (SLAM)R56AG058543 · NIA · UNIVERSITY OF WASHINGTON · PI LADIGES, WARREN C · 2018 to 2018
$867k
NIA NIH HHS AG022308NIA NIH HHS AG038070NIA NIH HHS AG047115NIA NIH HHS AG057381NIA NIH HHS AG058543NIA NIH HHS P30 AG038070NIA NIH HHS R01 AG057381NIA NIH HHS R24 AG047115NIA NIH HHS R56 AG058543NIA NIH HHS U01 AG022308NIDDK NIH HHS DK131019NIDDK NIH HHS DK131061NIDDK NIH HHS R01 DK131019NIDDK NIH HHS R01 DK131061NIGMS NIH HHS GM141309NIGMS NIH HHS R01 GM141309
6 · The paper itself

Abstract

The ability to quantify aging-related changes in histological samples is important, as it allows for evaluation of interventions intended to effect health span. We used a machine learning architecture that can be trained to detect and quantify these changes in the mouse kidney. Using additional held out data, we show validation of our model, correlation with scores given by pathologists using the Geropathology Research Network aging grading scheme, and its application in providing reproducible and quantifiable age scores for histological samples. Aging quantification also provides the insights into possible changes in image appearance that are independent of specific geropathology-specified lesions. Furthermore, we provide trained classifiers for H&E-stained slides, as well as tutorials on how to use these and how to create additional classifiers for other histological stains and tissues using our architecture. This architecture and combined resources allow for the high throughput quantification of mouse aging studies in general and specifically applicable to kidney tissues.

Indexed as

AgingMachine LearningAnimalsKidneyMiceHistological evaluationMachine learning approachMouse kidney

Identifiers

PMID38103095
PMCPMC10828469

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.