Evidence map›Paper›PMID 38102551›Full record

ArticleBMC bioinformatics2023

A novel and innovative cancer classification framework through a consecutive utilization of hybrid feature selection.

Rajul Mahto, Saboor Uddin Ahmed, Rizwan Ur Rahman, Rabia Musheer Aziz, Priyanka Roy, Saurav Mallik, Aimin Li, Mohd Asif Shah

Abstract read
In one paragraph

Article in BMC bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Rajul MahtoSchool of Computing Science and Engineering, VIT Bhopal University, Kothrikalan, Sehore, Madhya Pradesh, 46611, India.
Saboor Uddin AhmedSchool of Computing Science and Engineering, VIT Bhopal University, Kothrikalan, Sehore, Madhya Pradesh, 46611, India.
Rizwan Ur RahmanSchool of Computing Science and Engineering, VIT Bhopal University, Kothrikalan, Sehore, Madhya Pradesh, 46611, India.
Rabia Musheer AzizSchool of Advanced Sciences and Language, VIT Bhopal University, Kothrikalan, Sehore, Madhya Pradesh, 46611, India.
Priyanka RoySchool of Advanced Sciences and Language, VIT Bhopal University, Kothrikalan, Sehore, Madhya Pradesh, 46611, India. priyanka.roy@vitbhopal.ac.in.
Saurav MallikMolecular and Integrative Physiological Sciences, Department of Environmental Health, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA. sauravmtech2@gmail.com.
Aimin LiCenter for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, 77030, USA.
Mohd Asif ShahDepartment of Economics, Kebri Dehar University, Kebri Dehar, 250, Somali, Ethiopia. drmohdasifshah@kdu.edu.et.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancer prediction in the early stage is a topic of major interest in medicine since it allows accurate and efficient actions for successful medical treatments of cancer. Mostly cancer datasets contain various gene expression levels as features with less samples, so firstly there is a need to eliminate similar features to permit faster convergence rate of classification algorithms. These features (genes) enable us to identify cancer disease, choose the best prescription to prevent cancer and discover deviations amid different techniques. To resolve this problem, we proposed a hybrid novel technique CSSMO-based gene selection for cancer classification. First, we made alteration of the fitness of spider monkey optimization (SMO) with cuckoo search algorithm (CSA) algorithm viz., CSSMO for feature selection, which helps to combine the benefit of both metaheuristic algorithms to discover a subset of genes which helps to predict a cancer disease in early stage. Further, to enhance the accuracy of the CSSMO algorithm, we choose a cleaning process, minimum redundancy maximum relevance (mRMR) to lessen the gene expression of cancer datasets. Next, these subsets of genes are classified using deep learning (DL) to identify different groups or classes related to a particular cancer disease. Eight different benchmark microarray gene expression datasets of cancer have been utilized to analyze the performance of the proposed approach with different evaluation matrix such as recall, precision, F1-score, and confusion matrix. The proposed gene selection method with DL achieves much better classification accuracy than other existing DL and machine learning classification models with all large gene expression dataset of cancer.

Indexed as

AlgorithmsNeoplasmsGenetic TechniquesHumansMachine LearningMicroarray AnalysisCancer classificationCuckoo search algorithm (CSA)Deep learning (DL)Minimum redundancy maximum relevance (mRMR)Spider monkey optimization (SM)

Identifiers

PMID38102551
PMCPMC10724960

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.