ArticleNature communications2023
Maternal dominance contributes to subgenome differentiation in allopolyploid fishes.
Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed, 29 citations in OpenAlex.
- Complete Mitochondrial Genome and Phylogenetic Analysis of the Chungtien Schizothoracin (Current issues in molecular biology · 2026Article
- Triploidy in a pair of hybridizing salamanders at the far end of the speciation continuum.The Journal of heredity · 2026Article
- Article
- Schizothoracinae in Plateau River Networks: Drainage History, Polyploid Genome Evolution, Multi-Omics Evidence Chains, and Conservation Units.Animals : an open access journal from MDPI · 2026Review
- Effects of Hybridization and Triploidization on Transcription of Core Metabolic and Stress Response Genes in Rainbow Trout (Current issues in molecular biology · 2026Article
- A chromosome-level genome assembly of Hemibarbus maculatus.Scientific data · 2026Article
- A chromosome-level genome assembly of the East Asian fourfinger threadfin, Eleutheronema rhadinum (Jordan & Evermann, 1902).Scientific data · 2025Article
- KegAlign: optimizing pairwise alignments with diagonal partitioning.Genome biology · 2025Article
- The Influence of Genome Composition and Temperature on the Hatching Success and Development of the Offspring of AllotriploidInternational journal of molecular sciences · 2025Article
- Subgenome Partitioning and Polyploid Genome Evolution in the Loach Family Botiidae (Order Cypriniformes).Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Article
- Chromosome-level genome assembly of Qihe gibel carp.Scientific data · 2025Article
- Chromosome-level genome assembly and annotation of Spinibarbus caldwelli.Scientific data · 2025Article
- Chromosome-level genome assembly of rock carp (Procypris rabaudi).Scientific data · 2025Article
- The telomere-to-telomere genome assembly and annotation of the rock carp (Procypris rabaudi).Scientific data · 2025Article
- A Class of Allopolyploidy Showing High Duplicate Retention and Continued Homoeologous Exchanges.Genome biology and evolution · 2025Article
- A telomere-to-telomere genome assembly of koi carp (Cyprinus carpio) using long reads and Hi-C technology.GigaScience · 2025Article
- Integrated transcriptomic analysis reveals evolutionary and developmental characteristics of tendon ossification in teleost.BMC biology · 2024Article
- Rapid Sex Chromosome Turnover in African Clawed Frogs (Xenopus) and the Origins of New Sex Chromosomes.Molecular biology and evolution · 2024Article
- An improved transcriptome annotation reveals asymmetric expression and distinct regulation patterns in allotetraploid common carp.Communications biology · 2024Article
Corrections and comments
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Authors and funding
29 authors at 9 institutions in 4 countries.
Funding
Abstract
Teleost fishes, which are the largest and most diverse group of living vertebrates, have a rich history of ancient and recent polyploidy. Previous studies of allotetraploid common carp and goldfish (cyprinids) reported a dominant subgenome, which is more expressed and exhibits biased gene retention. However, the underlying mechanisms contributing to observed 'subgenome dominance' remains poorly understood. Here we report high-quality genomes of twenty-one cyprinids to investigate the origin and subsequent subgenome evolution patterns following three independent allopolyploidy events. We identify the closest extant relatives of the diploid progenitor species, investigate genetic and epigenetic differences among subgenomes, and conclude that observed subgenome dominance patterns are likely due to a combination of maternal dominance and transposable element densities in each polyploid. These findings provide an important foundation to understanding subgenome dominance patterns observed in teleost fishes, and ultimately the role of polyploidy in contributing to evolutionary innovations.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.