Evidence map›Paper›PMID 38100720›Full record

ArticleGenetics and molecular biology2023

Biomarker potential of the LEF1/TCF family members in breast cancer: Bioinformatic investigation on expression and clinical significance.

Beatriz Miotto Lima, Alexandre Luiz Korte de Azevedo, Igor Samesima Giner, Talita Helen Bombardelli Gomig, Enilze Maria de Souza Fonseca Ribeiro, Iglenir João Cavalli

Abstract read
In one paragraph

Article in Genetics and molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Beatriz Miotto LimaUniversidade Federal do Paraná, Departamento de Genética, Curitiba, Paraná, Brasil.
Alexandre Luiz Korte de AzevedoUniversidade Federal do Paraná, Departamento de Genética, Curitiba, Paraná, Brasil.
Igor Samesima GinerUniversidade Federal do Paraná, Departamento de Genética, Curitiba, Paraná, Brasil.
Talita Helen Bombardelli GomigUniversidade Federal do Paraná, Departamento de Genética, Curitiba, Paraná, Brasil.
Enilze Maria de Souza Fonseca RibeiroUniversidade Federal do Paraná, Departamento de Genética, Curitiba, Paraná, Brasil.ORCID http://orcid.org/0000-0002-2194-4727
Iglenir João CavalliUniversidade Federal do Paraná, Departamento de Genética, Curitiba, Paraná, Brasil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The LEF1/TCF transcription factor family is related to the development of diverse tissue types, including the mammary tissue, and dysregulation of its expression and function has been described to favor breast tumorigenesis. However, the clinical and biological relevance of this gene family in breast cancer is still poorly understood. Here, we used bioinformatics approaches aiming to reduce this gap. We investigated its expression patterns in molecular and immune breast cancer subtypes; its correlation with immune cell infiltration, and its prognostic values in predicting outcomes. Also, through regulons construction, we determined the genes whose expression is influenced by these transcription factors, and the pathways in which they are involved. We found that LEF1 and TCF3 are over-expressed in breast tumors regarding non-tumor samples, while TCF4 and TCF7 are down-expressed, with the gene's methylation status being associated with its expression dysregulation. All four transcription factors presented significance at the diagnostic and prognostic levels. LEF1, TCF4, and TCF7 presented a significant correlation with immune cell infiltration, being associated with the immune subtypes of less favorable outcomes. Altogether, this research contributes to a more accurate understanding of the expression and clinical and biomarker significance of the LEF1/TCF transcription factors in breast cancer.

Identifiers

PMID38100720
PMCPMC10723634

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.