Evidence map›Paper›PMID 38100535›Full record

ReviewRNA biology2024

Structural and computational studies of HIV-1 RNA.

Lev Levintov, Harish Vashisth

Open access · goldAbstract readReview
In one paragraph

Review in RNA biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Mechanism of HIV-1 Capsid Rupture and Uncoating by Reverse Transcription.bioRxiv : the preprint server for biology · 2026
    Article
  5. RBM45 Preferential Binding to mThe journal of physical chemistry. B · 2026
    Article
  6. Review
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Lev LevintovDepartment of Chemical Engineering & Bioengineering, University of New Hampshire, Durham, USA.ORCID 0000-0002-7950-9226
Harish VashisthDepartment of Chemical Engineering & Bioengineering, University of New Hampshire, Durham, USA.ORCID 0000-0002-2087-2880
University of New Hampshire · US

Funding

Peptides and Small-molecules Targeting Signaling Proteins and Protein-Protein InterfacesR35GM138217 · NIGMS · UNIVERSITY OF NEW HAMPSHIRE · PI Harish Vashisth · 2020 to 2026
$2.9M
NIGMS NIH HHS R35 GM138217
6 · The paper itself

Abstract

Viruses remain a global threat to animals, plants, and humans. The type 1 human immunodeficiency virus (HIV-1) is a member of the retrovirus family and carries an RNA genome, which is reverse transcribed into viral DNA and further integrated into the host-cell DNA for viral replication and proliferation. The RNA structures from the HIV-1 genome provide valuable insights into the mechanisms underlying the viral replication cycle. Moreover, these structures serve as models for designing novel therapeutic approaches. Here, we review structural data on RNA from the HIV-1 genome as well as computational studies based on these structural data. The review is organized according to the type of structured RNA element which contributes to different steps in the viral replication cycle. This is followed by an overview of the HIV-1 transactivation response element (TAR) RNA as a model system for understanding dynamics and interactions in the viral RNA systems. The review concludes with a description of computational studies, highlighting the impact of biomolecular simulations in elucidating the mechanistic details of various steps in the HIV-1's replication cycle.

Indexed as

HIV-1AnimalsHIV Long Terminal RepeatHumansRNA, ViralVirus ReplicationRNA, Viralcomputational studiesgenome packagingHIV-1 replication cyclenuclear exportreverse transcriptionribonucleic acid (RNA)transactivation response element (TAR)transcriptiontranslationType 1 human immunodeficiency virus (HIV-1)

Identifiers

PMID38100535
PMCPMC10730233
OpenAlexW4389778031

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.