Evidence map›Paper›PMID 38098212›Full record

ArticleFEBS open bio2024

Development of a mouse embryonic stem cell model for investigating the functions of the linker histone H1-4.

Abed Alkarem Abu Alhaija, Imtiaz Nisar Lone, Esin Ozkuru Sekeroglu, Tugce Batur, Dimitar Angelov, Stefan Dimitrov, Ali Hamiche, Elif Nur Firat Karalar, Muhammed Erdem Ercan, Tamer Yagci and 2 more

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Abed Alkarem Abu AlhaijaDepartment of Molecular Biology and Genetics, Faculty of Basic Sciences, Gebze Technical University, Turkey.
Imtiaz Nisar LoneIzmir Biomedicine and Genome Center, Turkey.ORCID 0000-0002-1137-2569
Esin Ozkuru SekerogluIzmir Biomedicine and Genome Center, Turkey.
Tugce BaturIzmir Biomedicine and Genome Center, Turkey.
Dimitar AngelovIzmir Biomedicine and Genome Center, Turkey.ORCID 0000-0002-5511-6647
Stefan DimitrovIzmir Biomedicine and Genome Center, Turkey.
Ali HamicheInstitut de Génétique et Biologie Moléculaire et Cellulaire (IGBMC), UdS, CNRS, INSERM, Strasbourg, France.
Elif Nur Firat KaralarDepartment of Molecular Biology and Genetics, Koç University, Istanbul, Turkey.ORCID 0000-0001-7589-473X
Muhammed Erdem ErcanDepartment of Molecular Biology and Genetics, Koç University, Istanbul, Turkey.ORCID 0000-0002-8616-7973
Tamer YagciDepartment of Molecular Biology and Genetics, Faculty of Basic Sciences, Gebze Technical University, Turkey.ORCID 0000-0003-2050-7477
Hani AlotaibiIzmir Biomedicine and Genome Center, Turkey.ORCID 0000-0001-7423-9653
Muhammed Kasim DirilIzmir Biomedicine and Genome Center, Turkey.
Izmir University · TRCentre National de la Recherche Scientifique · FRGebze Technical University · TRKoç University · TRUniversité Claude Bernard Lyon 1 · FR

Funding

Agence Nationale de la Recherche 101086923-AEGIS-IMBAgence Nationale de la Recherche ANR-21-CE12-0017Agence Nationale de la Recherche ANR-21-CE45-0032Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 120C149Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 122N046
6 · The paper itself

Abstract

The linker histone H1 C-terminal domain (CTD) plays a pivotal role in chromatin condensation. De novo frameshift mutations within the CTD coding region of H1.4 have recently been reported to be associated with Rahman syndrome, a neurological disease that causes intellectual disability and overgrowth. To investigate the mechanisms and pathogenesis of Rahman syndrome, we developed a cellular model using murine embryonic stem cells (mESCs) and CRISPR/Cas9 genome engineering. Our engineered mES cells facilitate detailed investigations, such as H1-4 dynamics, immunoprecipitation, and nuclear localization; in addition, we tagged the mutant H1-4 with a photoactivatable GFP (PA-GFP) and an HA tag to facilitate pulldown assays. We anticipate that these engineered cells could also be used for the development of a mouse model to study the in vivo role of the H1-4 protein.

Indexed as

HistonesMouse Embryonic Stem CellsAnimalsChromatinMiceChromatinH1f4 protein, mouseHistonescellular modelCRISPR/Cas9H1.4linker histonesmES cellsRahman syndrome

Identifiers

PMID38098212
PMCPMC10839353
OpenAlexW4389791058

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.