Evidence map›Paper›PMID 38097594›Full record

ArticleScientific reports2023

Deployment and assessment of a deep learning model for real-time detection of anal precancer with high frame rate high-resolution microendoscopy.

David Brenes, Alex Kortum, Jackson Coole, Jennifer Carns, Richard Schwarz, Imran Vohra, Rebecca Richards-Kortum, Yuxin Liu, Zhenjian Cai, Keith Sigel and 3 more

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

David BrenesDepartment of Bioengineering, Rice University, MS-142 6100 Main St., Houston, TX, 77005, USA. dbrenes@uw.edu.
Alex KortumDepartment of Bioengineering, Rice University, MS-142 6100 Main St., Houston, TX, 77005, USA.
Jackson CooleDepartment of Bioengineering, Rice University, MS-142 6100 Main St., Houston, TX, 77005, USA.
Jennifer CarnsDepartment of Bioengineering, Rice University, MS-142 6100 Main St., Houston, TX, 77005, USA.
Richard SchwarzDepartment of Bioengineering, Rice University, MS-142 6100 Main St., Houston, TX, 77005, USA.
Imran VohraBiotex, 114 Holmes Rd., Houston, TX, 77045, USA.
Rebecca Richards-KortumDepartment of Bioengineering, Rice University, MS-142 6100 Main St., Houston, TX, 77005, USA.
Yuxin LiuDepartment of Pathology, Icahn School of Medicine at Mount Sinai, 1468 Madison Avenue, New York, NY, 10029, USA.
Zhenjian CaiClinical Pathology Laboratories, 9200 Wall Street, Austin, TX, 78754, USA.
Keith SigelDepartment of Medicine, Icahn School of Medicine at Mount Sinai, One Gustave Levy Place, New York, NY, 10029, USA.
Sharmila AnandasabapathyDepartment of Medicine, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Michael GaisaDepartment of Medicine, Icahn School of Medicine at Mount Sinai, One Gustave Levy Place, New York, NY, 10029, USA.
Elizabeth ChiaoDepartment of Epidemiology, Division of Cancer Prevention, University of Texas - MD Anderson Cancer Center, 1155 Pressler St., Unit 1340, Houston, TX, 77030, USA. EYChiao@mdanderson.org.

Funding

The Effectiveness of High Resolution Microendoscopy (HRME) in High Grade Intraepithelial Lesions (HSIL)Diagnosis for People Living with HIVR01CA232890 · NCI · BAYLOR COLLEGE OF MEDICINE · PI ANANDASABAPATHY, SHARMILA, CHIAO, ELIZABETH Y. · 2019 to 2025
$5.2M
Low-cost mobile colposcopy and confocal imaging for global prevention of cervical cancerR01CA251911 · NCI · RICE UNIVERSITY · PI RICHARDS-KORTUM, REBECCA R., SCHMELER, KATHLEEN · 2020 to 2024
$2.8M
NCI NIH HHS R01 CA232890NCI NIH HHS R01 CA251911NIH HHS R01CA232890
6 · The paper itself

Abstract

Anal cancer incidence is significantly higher in people living with HIV as HIV increases the oncogenic potential of human papillomavirus. The incidence of anal cancer in the United States has recently increased, with diagnosis and treatment hampered by high loss-to-follow-up rates. Novel methods for the automated, real-time diagnosis of AIN 2+ could enable "see and treat" strategies, reducing loss-to-follow-up rates. A previous retrospective study demonstrated that the accuracy of a high-resolution microendoscope (HRME) coupled with a deep learning model was comparable to expert clinical impression for diagnosis of AIN 2+ (sensitivity 0.92 [P = 0.68] and specificity 0.60 [P = 0.48]). However, motion artifacts and noise led to many images failing quality control (17%). Here, we present a high frame rate HRME (HF-HRME) with improved image quality, deployed in the clinic alongside a deep learning model and evaluated prospectively for detection of AIN 2+ in real-time. The HF-HRME reduced the fraction of images failing quality control to 4.6% by employing a high frame rate camera that enhances contrast and limits motion artifacts. The HF-HRME outperformed the previous HRME (P < 0.001) and clinical impression (P < 0.0001) in the detection of histopathologically confirmed AIN 2+ with a sensitivity of 0.91 and specificity of 0.87.

Indexed as

Anus NeoplasmsDeep LearningHIV InfectionsDiagnostic ImagingEndoscopyHumansUnited States

Identifiers

PMID38097594
PMCPMC10721617

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.