Evidence map›Paper›PMID 38096902›Full record

ArticleNature2024

Structures, functions and adaptations of the human LINE-1 ORF2 protein.

Eric T Baldwin, Trevor van Eeuwen, David Hoyos, Arthur Zalevsky, Egor P Tchesnokov, Roberto Sánchez, Bryant D Miller, Luciano H Di Stefano, Francesc Xavier Ruiz, Matthew Hancock and 35 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
44.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 113 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. LINE-1 Retrotransposons and Amyotrophic Lateral Sclerosis.International journal of molecular sciences · 2026
    Review
  13. Article
  14. Testing the reliability of AI-generated protein structures.bioRxiv : the preprint server for biology · 2026
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

45 authors at 14 institutions in 6 countries.

Eric T Baldwin *ROME Therapeutics, Boston, MA, USA.
Trevor van Eeuwen *Laboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-0549-1702
David Hoyos *Computational Oncology, Department of Epidemiology & Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA.
Arthur Zalevsky *Department of Bioengineering and Therapeutic Sciences University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0001-6987-8119
Egor P TchesnokovDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada.
Roberto SánchezROME Therapeutics, Boston, MA, USA.
Bryant D MillerDepartment of Pathology, Dana Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.ORCID 0009-0006-9145-8499
Luciano H Di StefanoEuropean Research Institute for the Biology of Ageing, University Medical Center Groningen, Groningen, The Netherlands.
Francesc Xavier RuizCenter for Advanced Biotechnology and Medicine and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ, USA.ORCID 0000-0002-0457-0030
Matthew HancockDepartment of Bioengineering and Therapeutic Sciences University of California, San Francisco, San Francisco, CA, USA.
Esin IşikDepartment of Pathology, Dana Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.
Carlos Mendez-DorantesDepartment of Pathology, Dana Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-8190-8568
Thomas WalpoleCharles River Laboratories, Chesterford Research Park, Saffron Walden, UK.
Charles NicholsCharles River Laboratories, Chesterford Research Park, Saffron Walden, UK.
Paul WanCharles River Laboratories, Chesterford Research Park, Saffron Walden, UK.
Kirsi RientoCharles River Laboratories, Chesterford Research Park, Saffron Walden, UK.
Rowan Halls-KassCharles River Laboratories, Chesterford Research Park, Saffron Walden, UK.
Martin AugustinProteros Biostructures GmbH, Martinsried, Planegg, Germany.
Alfred LammensProteros Biostructures GmbH, Martinsried, Planegg, Germany.
Anja JestelProteros Biostructures GmbH, Martinsried, Planegg, Germany.
Paula UplaLaboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY, USA.
Kera XibinakuWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Samantha CongreveWhitehead Institute for Biomedical Research, Cambridge, MA, USA.ORCID 0009-0001-5277-2235
Maximiliaan HenninkWhitehead Institute for Biomedical Research, Cambridge, MA, USA.ORCID 0009-0000-1589-1780
Kacper B RogalaDepartment of Structural Biology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0001-5997-7770
Anna M SchneiderStructural Biology of Selfish RNA, Department of Protein Evolution, Max Planck Institute for Biology, Tübingen, Germany.
Jennifer E FairmanJohns Hopkins University School of Medicine, Baltimore, MD, USA.ORCID 0000-0002-2319-1773
Shawn M ChristensenDepartment of Biology, University of Texas at Arlington, Arlington, TX, USA.
Brian DesrosiersROME Therapeutics, Boston, MA, USA.
Gregory S BisacchiROME Therapeutics, Boston, MA, USA.
Oliver L SaundersROME Therapeutics, Boston, MA, USA.
Nafeeza HafeezROME Therapeutics, Boston, MA, USA.
Wenyan MiaoROME Therapeutics, Boston, MA, USA.
Rosana KapellerROME Therapeutics, Boston, MA, USA.
Dennis M ZallerROME Therapeutics, Boston, MA, USA.
Andrej SaliDepartment of Bioengineering and Therapeutic Sciences University of California, San Francisco, San Francisco, CA, USA.ORCID 0000-0003-0435-6197
Oliver WeichenriederStructural Biology of Selfish RNA, Department of Protein Evolution, Max Planck Institute for Biology, Tübingen, Germany.ORCID 0000-0001-5818-6248
Kathleen H BurnsDepartment of Pathology, Dana Farber Cancer Institute and Harvard Medical School, Boston, MA, USA. kathleenh_burns@dfci.harvard.edu.ORCID 0000-0003-1620-3761
Matthias GötteDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, Alberta, Canada. gotte@ualberta.ca.ORCID 0000-0001-6213-5806
Michael P RoutLaboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY, USA. rout@rockefeller.edu.ORCID 0000-0003-2010-706X
Eddy ArnoldCenter for Advanced Biotechnology and Medicine and Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, NJ, USA. arnold@cabm.rutgers.edu.ORCID 0000-0003-2612-9622
Benjamin D GreenbaumComputational Oncology, Department of Epidemiology & Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY, USA. greenbab@mskcc.org.ORCID 0000-0001-6153-8793
Donna L RomeroROME Therapeutics, Boston, MA, USA. dlromero@rometx.com.ORCID 0000-0002-3009-1965
John LaCavaLaboratory of Cellular and Structural Biology, The Rockefeller University, New York, NY, USA. j.p.lacava@rug.nl.ORCID 0000-0002-6307-7713
Martin S Taylor *Department of Pathology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA. mstaylor@mgh.harvard.edu.ORCID 0000-0003-1560-9276
Charles River Laboratories (United Kingdom) · GBHarvard University · USQB3 · USRockefeller University · USWhitehead Institute for Biomedical Research · USMax Planck Institute for Biology · DEMemorial Sloan Kettering Cancer Center · USRutgers, The State University of New Jersey · USUniversity Medical Center Groningen · NLUniversity of Alberta · CAJohns Hopkins University · USStanford University · USThe University of Texas at Arlington · USXerox (France) · FR

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Somatic Activation of Retrotransposition: A New Molecular Mechanism of Aging?P01AG051449 · NIA · BROWN UNIVERSITY · PI STEPHEN L HELFAND · 2016 to 2026
$30.4M
TR&D Project 4. The Imaging Stage: Multiscale Spatiotemporal Modeling of Macromolecular Systems in Cellular NeighborhoodsP41GM109824 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2014 to 2023
$18.8M
MOLECULAR IMMUNOLOGY AND TUMOR BIOLOGYT32CA009216 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI David Michael Langenau · 1985 to 2026
$10.6M
IMP: Software for Hybrid Determination of Macromolecular Assembly StructuresR01GM083960 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SALI, ANDREJ · 2008 to 2024
$5.2M
Modulating anti-HIV immunity by plasmacytoid dendritic cellsR01AI081848 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BHARDWAJ, NINA · 2010 to 2021
$4.5M
STRUCTURES OF HIV REVERSE TRANSCRIPTASE WITH SUBSTRATESR01AI027690 · NIAID · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI EDWARD ARNOLD · 1989 to 2026
$4.3M
Defining molecular contributions of LINE-1 retrotransposons to AD / ADRDR01AG078925 · NIA · ROCKEFELLER UNIVERSITY · PI John LaCava, John M Sedivy · 2022 to 2026
$3.7M
Understanding the Relationship of Repeat Expression and MetastasisR01CA240924 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2019 to 2023
$3.3M
A Statistical Physics Framework for Understanding the Role of Repeat RNA in Tumor ImmunityU01CA228963 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI GREENBAUM, BENJAMIN, TING, DAVID TSAI · 2020 to 2024
$3.2M
Demonstrating interactome-level connections between Alzheimer disease, LINE-1 retrotransposons, and cellular senescenceR01GM126170 · NIGMS · ROCKEFELLER UNIVERSITY · PI LACAVA, JOHN · 2018 to 2021
$2.4M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA240924NCI NIH HHS T32 CA009216NCI NIH HHS U01 CA228963NIAID NIH HHS R01 AI027690NIAID NIH HHS R01 AI081848NIA NIH HHS P01 AG051449NIA NIH HHS R01 AG078925NIDDK NIH HHS K08 DK129824NIGMS NIH HHS P41 GM109824NIGMS NIH HHS R01 GM083960NIGMS NIH HHS R01 GM126170NIGMS NIH HHS R01 GM130680NIGMS NIH HHS T32 GM149436NIGMS NIH HHS U24 GM129539
6 · The paper itself

Abstract

The LINE-1 (L1) retrotransposon is an ancient genetic parasite that has written around one-third of the human genome through a 'copy and paste' mechanism catalysed by its multifunctional enzyme, open reading frame 2 protein (ORF2p)

Indexed as

EndonucleasesLong Interspersed Nucleotide ElementsReverse TranscriptionRNA-Directed DNA PolymeraseCryoelectron MicroscopyCrystallography, X-RayCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDNAHumansImmunity, InnateInterferonsRNASTING ProteincGAS protein, humanCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDNAEndonucleasesInterferonsORF2 protein, humanRNARNA-Directed DNA PolymeraseSTING1 protein, humanSTING Protein

Identifiers

PMID38096902
PMCPMC10830420
OpenAlexW4389729205

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.