Evidence map›Paper›PMID 38096822›Full record

ArticleCell2024

Metabolic diversity in commensal protists regulates intestinal immunity and trans-kingdom competition.

Elias R Gerrick, Soumaya Zlitni, Patrick T West, Matthew M Carter, Claire M Mechler, Matthew R Olm, Elisa B Caffrey, Jessica A Li, Steven K Higginbottom, Christopher J Severyn and 5 more

Open access · greenAbstract read
In one paragraph

Article in Cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Evolution and ecology of commensal gut protists: recent advances.Current opinion in genetics & development · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Tet1 safeguards lineage allocation in intestinal stem cells.bioRxiv : the preprint server for biology · 2025
    Article
  15. American journal of physiology. Gastrointestinal and liver physiology · 2025
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Tuft cells in the intestine, immunity and beyond.Nature reviews. Gastroenterology & hepatology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Elias R GerrickDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Soumaya ZlitniDepartment of Genetics, Stanford University, Stanford, CA 94305, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Patrick T WestDepartment of Genetics, Stanford University, Stanford, CA 94305, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Matthew M CarterDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Claire M MechlerDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Matthew R OlmDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Elisa B CaffreyDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Jessica A LiDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Steven K HigginbottomDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA.
Christopher J SeverynDepartment of Genetics, Stanford University, Stanford, CA 94305, USA; Department of Pediatrics, Division of Hematology/Oncology/Stem Cell Transplant and Regenerative Medicine Stanford University, Palo Alto, CA 94305, USA.
Frauke KrackeDepartment of Civil and Environmental Engineering, Stanford University, Stanford, CA 94305, USA.
Alfred M SpormannDepartment of Civil and Environmental Engineering, Stanford University, Stanford, CA 94305, USA; Department of Chemical Engineering, Stanford University, Stanford, CA 94305, USA.
Justin L SonnenburgDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94158, USA.
Ami S BhattDepartment of Genetics, Stanford University, Stanford, CA 94305, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Michael R HowittDepartment of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: mhowitt@stanford.edu.
Stanford University · USChan Zuckerberg Initiative (United States) · USStanford Medicine · US

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Impact of Diet on Intestinal Microbiota-Host DynamicsR01DK085025 · NIDDK · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 2010 to 2026
$6.4M
Culture-free pathogen tracking in hospitalized patientsR01AI143757 · NIAID · STANFORD UNIVERSITY · PI BHATT, AMI SIDDHARTH · 2020 to 2023
$3.0M
Program in Translational and Experimental HematologyT32HL120824 · NHLBI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2014 to 2023
$2.4M
Impact of symbiotic protists on intestinal T cell homeostasis and inflammation.R01DK128292 · NIDDK · STANFORD UNIVERSITY · PI HOWITT, MICHAEL R · 2021 to 2025
$2.3M
Emerging novel mechanisms of antibiotic resistance in the prevalent foodborne pathogen, SalmonellaR01AI148623 · NIAID · STANFORD UNIVERSITY · PI BHATT, AMI SIDDHARTH · 2019 to 2023
$2.0M
The role of colonic tuft cells in microbial detection and mucosal immunityR01DK138076 · NIDDK · STANFORD UNIVERSITY · PI Michael R Howitt · 2024 to 2026
$1.9M
Chemosensory tuft cells and intestinal homeostasisK01DK113041 · NIDDK · STANFORD UNIVERSITY · PI HOWITT, MICHAEL R · 2017 to 2021
$763k
Tuft cell regulation of Peyers patch composition and organizationR21AI171222 · NIAID · STANFORD UNIVERSITY · PI HOWITT, MICHAEL R · 2022 to 2023
$438k
NHLBI NIH HHS T32 HL120824NIAID NIH HHS R01 AI143757NIAID NIH HHS R01 AI148623NIAID NIH HHS R21 AI171222NIAID NIH HHS T32 AI007290NIDDK NIH HHS K01 DK113041NIDDK NIH HHS R01 DK085025NIDDK NIH HHS R01 DK128292NIDDK NIH HHS R01 DK138076
6 · The paper itself

Abstract

The microbiota influences intestinal health and physiology, yet the contributions of commensal protists to the gut environment have been largely overlooked. Here, we discover human- and rodent-associated parabasalid protists, revealing substantial diversity and prevalence in nonindustrialized human populations. Genomic and metabolomic analyses of murine parabasalids from the genus Tritrichomonas revealed species-level differences in excretion of the metabolite succinate, which results in distinct small intestinal immune responses. Metabolic differences between Tritrichomonas species also determine their ecological niche within the microbiota. By manipulating dietary fibers and developing in vitro protist culture, we show that different Tritrichomonas species prefer dietary polysaccharides or mucus glycans. These polysaccharide preferences drive trans-kingdom competition with specific commensal bacteria, which affects intestinal immunity in a diet-dependent manner. Our findings reveal unappreciated diversity in commensal parabasalids, elucidate differences in commensal protist metabolism, and suggest how dietary interventions could regulate their impact on gut health.

Indexed as

Gastrointestinal MicrobiomeParabasalideaPolysaccharidesAnimalsBiodiversityDietary CarbohydratesDietary FiberHumansIntestine, SmallMiceDietary CarbohydratesDietary FiberPolysaccharidescommensal protistfibermetabolitesmicrobiomemicrobiota-accessible carbohydratemucusparabasalidtrans-kingdomTritrichomonastuft cell

Identifiers

PMID38096822
PMCPMC12296295
OpenAlexW4389687641

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.