Evidence map›Paper›PMID 38096567›Full record

ArticleJournal of the American Chemical Society2023

Mapping Single-Molecule Protein Complexes in 3D with DNA Nanoswitch Calipers.

Prakash Shrestha, Darren Yang, Andrew Ward, William M Shih, Wesley P Wong

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Prakash ShresthaProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.ORCID 0000-0002-7914-7122
Darren YangProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.
Andrew WardProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.
William M ShihWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts 02215, United States.ORCID 0000-0002-1395-9267
Wesley P WongProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.ORCID 0000-0001-7398-546X

Funding

Mechanical forces in nanoscale biology: From hemostasis to single-molecule centrifugationR35GM119537 · NIGMS · BOSTON CHILDREN'S HOSPITAL · PI Wesley Philip Wong · 2016 to 2026
$5.2M
NIGMS NIH HHS R35 GM119537
6 · The paper itself

Abstract

The ability to accurately map the 3D geometry of single-molecule complexes in trace samples is a challenging goal that would lead to new insights into molecular mechanics and provide an approach for single-molecule structural proteomics. To enable this, we have developed a high-resolution force spectroscopy method capable of measuring multiple distances between labeled sites in natively folded protein complexes. Our approach combines reconfigurable nanoscale devices, we call DNA nanoswitch calipers, with a force-based barcoding system to distinguish each measurement location. We demonstrate our approach by reconstructing the tetrahedral geometry of biotin-binding sites in natively folded streptavidin, with 1.5-2.5 Å agreement with previously reported structures.

Indexed as

BiotinNanotechnologyBinding SitesDNAStreptavidinBiotinDNAStreptavidin

Identifiers

PMID38096567
PMCPMC10755700

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.