Evidence map›Paper›PMID 38096484›Full record

ArticleG3 (Bethesda, Md.)2024

Identification of genetic and environmental factors influencing aerial root traits that support biological nitrogen fixation in sorghum.

Emily S A Wolf, Saddie Vela, Jennifer Wilker, Alyssa Davis, Madalen Robert, Valentina Infante, Rafael E Venado, Cătălin Voiniciuc, Jean-Michel Ané, Wilfred Vermerris

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Genetic determinants of aerial root morphology in Sierra Mixe-derived maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Emily S A WolfPlant Molecular and Cellular Biology Graduate Program, University of Florida, Gainesville, FL 32609, USA.ORCID 0000-0002-0331-3788
Saddie VelaPlant Molecular and Cellular Biology Graduate Program, University of Florida, Gainesville, FL 32609, USA.ORCID 0000-0001-9504-7159
Jennifer WilkerDepartment of Bacteriology, University of Wisconsin, Madison, WI 53706, USA.ORCID 0000-0003-2329-5457
Alyssa DavisDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32610, USA.
Madalen RobertIndependent Junior Research Group-Designer Glycans, Leibniz Institute of Plant Biochemistry, 06120 Halle (Saale), Germany.ORCID 0000-0003-2336-3309
Valentina InfanteDepartment of Bacteriology, University of Wisconsin, Madison, WI 53706, USA.ORCID 0009-0009-6705-1754
Rafael E VenadoDepartment of Bacteriology, University of Wisconsin, Madison, WI 53706, USA.ORCID 0000-0002-5020-0348
Cătălin VoiniciucDepartment of Horticultural Sciences, University of Florida, Gainesville, FL 32609, USA.ORCID 0000-0001-9105-014X
Jean-Michel AnéDepartment of Bacteriology, University of Wisconsin, Madison, WI 53706, USA.ORCID 0000-0002-3128-9439
Wilfred VermerrisDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0002-4582-3436
University of Florida · USUniversity of Wisconsin–Madison · US

Funding

German Academic Exchange ServiceLeibniz Institute of Plant BiochemistryResearch Capacity Fund 7004470UF College of Agricultural and Life SciencesUF Graduate SchoolUF/IFASUSDA National Institute of Food and AgricultureU.S. Department of Energy Office of Science DE-SC0021052
6 · The paper itself

Abstract

Plant breeding and genetics play a major role in the adaptation of plants to meet human needs. The current requirement to make agriculture more sustainable can be partly met by a greater reliance on biological nitrogen fixation by symbiotic diazotrophic microorganisms that provide crop plants with ammonium. Select accessions of the cereal crop sorghum (Sorghum bicolor (L.) Moench) form mucilage-producing aerial roots that harbor nitrogen-fixing bacteria. Breeding programs aimed at developing sorghum varieties that support diazotrophs will benefit from a detailed understanding of the genetic and environmental factors contributing to aerial root formation. A genome-wide association study of the sorghum minicore, a collection of 242 landraces, and 30 accessions from the sorghum association panel was conducted in Florida and Wisconsin and under 2 fertilizer treatments to identify loci associated with the number of nodes with aerial roots and aerial root diameter. Sequence variation in genes encoding transcription factors that control phytohormone signaling and root system architecture showed significant associations with these traits. In addition, the location had a significant effect on the phenotypes. Concurrently, we developed F2 populations from crosses between bioenergy sorghums and a landrace that produced extensive aerial roots to evaluate the mode of inheritance of the loci identified by the genome-wide association study. Furthermore, the mucilage collected from aerial roots contained polysaccharides rich in galactose, arabinose, and fucose, whose composition displayed minimal variation among 10 genotypes and 2 fertilizer treatments. These combined results support the development of sorghums with the ability to acquire nitrogen via biological nitrogen fixation.

Indexed as

SorghumEdible GrainFertilizersGenome-Wide Association StudyHumansNitrogen FixationPhenotypePlant BreedingFertilizersadventitious rootbioenergybrace rootdiazotrophGWASminicoremucilagenodal rootpolysaccharideSorghum bicolor (L ) Moench

Identifiers

PMID38096484
PMCPMC10917507
OpenAlexW4389721310

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.