Evidence map›Paper›PMID 38096164›Full record

ArticlePloS one2023

Performance of the cobas EZH2 mutation test on clinical samples from non-Hodgkin lymphoma patients.

Johnny Y Shyu, Peter A Schlag, Sylwia M Karwowska, Chitra F Manohar, Huan M Truong, John W Longshore, Guili Zhang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 67% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Johnny Y ShyuRoche Molecular Systems, Inc., Pleasanton, California, United States of America.
Peter A SchlagRoche Molecular Systems, Inc., Pleasanton, California, United States of America.ORCID 0000-0001-7746-328X
Sylwia M KarwowskaRoche Molecular Systems, Inc., Pleasanton, California, United States of America.
Chitra F ManoharRoche Molecular Systems, Inc., Pleasanton, California, United States of America.ORCID 0000-0002-0935-6068
Huan M TruongRoche Molecular Systems, Inc., Pleasanton, California, United States of America.
John W LongshoreCarolinas Pathology Group and Carolinas HealthCare System, Charlotte, North Carolina, United States of America.
Guili ZhangRoche Molecular Systems, Inc., Pleasanton, California, United States of America.
Materials Systems (United States) · USCarolinas Healthcare System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo present the technical verification and clinical validation of the companion diagnostic assay, cobas® EZH2 Mutation Test (cobas EZH2 Test), targeting gain-of-function EZH2 mutations in follicular lymphoma (FL) and diffuse large B-cell lymphoma (DLBCL). The focus is on patient clinical samples proving that the test met the performance criteria required for FDA approval of a companion diagnostic test.

designEpizyme, Inc., Eisai Co., Ltd., and Roche Molecular Systems, Inc., collaborated to develop the cobas EZH2 Test on an RT-PCR platform. The assay design needed to detect the gain-of-function EZH2 mutations found in FL and DLBCL indications. Thus, the test was optimized for investigational purposes in a clinical trial setting. Part of its technical verification included testing of patient tumor samples with a documented diagnosis of FL and DLBCL procured from commercial vendors, and the clinical validation used patient samples from the Epizyme clinical study. Both the technical performance verification method correlation study (104 clinical commercially acquired samples) and the clinical validation accuracy study (341 patient samples from the therapeutic study) used next-generation sequencing as a reference method to establish true vs. false results by cobas EZH2 Test. The reproducibility study used a 15-member panel of DNA samples with varying EZH2 mutation status from procured clinical FL and DLBCL patient samples under multiple variables.

resultsSingle and rare, infrequent double EZH2 mutations were detected in FL and DLBCL samples. Agreements between results from cobas EZH2 and sequencing were >98% from commercial clinical samples and from the therapeutic study clinical samples. The reproducibility study obtained 178 to 180 valid results for each panel member, with an overall invalid rate of 0.37%. The agreement for each per panel member was 100%.

conclusioncobas EZH2 Test data demonstrated that the test is reliable and will perform well in a commercial customer environment.

Indexed as

Lymphoma, FollicularLymphoma, Large B-Cell, DiffuseDNA Mutational AnalysisEnhancer of Zeste Homolog 2 ProteinHumansMutationReproducibility of ResultsEnhancer of Zeste Homolog 2 ProteinEZH2 protein, human

Identifiers

PMID38096164
PMCPMC10721068
OpenAlexW4389766243

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.