Evidence map›Paper›PMID 38095842›Full record

ArticleGenes & genomics2024

O- and N-Methyltransferases in benzylisoquinoline alkaloid producing plants.

Seungki Lee, Nam-Il Park, Yeri Park, Kyong-Cheul Park, Eun Sil Kim, Youn Kyoung Son, Beom-Soon Choi, Nam-Soo Kim, Ik-Young Choi

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Article in Genes & genomics, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Seungki LeeBiological Resources Assessment Division, National Institute of Biological Resources, Incheon, 22689, Republic of Korea.
Nam-Il ParkDepartment of Plant Science, Gangneung-Wonju National University, Gangneung, 25457, Republic of Korea.
Yeri ParkDepartment of Plant Science, Gangneung-Wonju National University, Gangneung, 25457, Republic of Korea.
Kyong-Cheul ParkDepartment of Smart Farm and Agricultural Industry, Kangwon National University, Chuncheon, 24341, Republic of Korea.
Eun Sil KimBiological Resources Assessment Division, National Institute of Biological Resources, Incheon, 22689, Republic of Korea.
Youn Kyoung SonBiological Resources Assessment Division, National Institute of Biological Resources, Incheon, 22689, Republic of Korea.
Beom-Soon ChoiNBIT Co., Ltd, Chuncheon, 24341, Republic of Korea.
Nam-Soo KimNBIT Co., Ltd, Chuncheon, 24341, Republic of Korea. kimnamsu@kangwon.ac.
Ik-Young ChoiDepartment of Smart Farm and Agricultural Industry, Kangwon National University, Chuncheon, 24341, Republic of Korea. choii@kangwon.ac.kr.ORCID 0000-0003-4168-0471
Kangwon National University · KRNational Institute of Biological Resources · KRGangneung–Wonju National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSecondary metabolites such as benzylisoquinoline alkaloids (BIA) have attracted considerable attention because of their pharmacological properties and potential therapeutic applications. Methyltransferases (MTs) can add methyl groups to alkaloid molecules, altering their physicochemical properties and bioactivity, stability, solubility, and recognition by other cellular components. Five types of O-methyltransferases and two types of N-methyltransferases are involved in BIA biosynthesis.

objectiveSince MTs may be the source for the discovery and development of novel biomedical, agricultural, and industrial compounds, we performed extensive molecular and phylogenetic analyses of O- and N-methyltransferases in BIA-producing plants.

methodsMTs involved in BIA biosynthesis were isolated from transcriptomes of Berberis koreana and Caulophyllum robustum. We also mined the methyltransferases of Coptis japonica, Papaver somniferum, and Nelumbo nucifera from the National Center for Biotechnology Information protein database. Then, we analyzed the functional motifs and phylogenetic analysis.

resultWe mined 42 O-methyltransferases and 8 N-methyltransferases from the five BIA-producing plants. Functional motifs for S-adenosyl-L-methionine-dependent methyltransferases were retained in most methyltransferases, except for the three O-methyltransferases from N. nucifera. Phylogenetic analysis revealed that the methyltransferases were grouped into four clades, I, II, III and IV. The clustering patterns in the phylogenetic analysis suggested a monophyletic origin of methyltransferases and gene duplication within species. The coexistence of different O-methyltransferases in the deep branch subclade might support some cases of substrate promiscuity.

conclusionsMethyltransferases may be a source for the discovery and development of novel biomedical, agricultural, and industrial compounds. Our results contribute to further understanding of their structure and reaction mechanisms, which will require future functional studies.

Indexed as

AlkaloidsBenzylisoquinolinesMethyltransferasesPhylogenyPlantsAlkaloidsBenzylisoquinolinesMethyltransferasesBenzylisoquinoline alkaloids (BIAs)Enzyme promiscuityGene duplicationMethyltransferase

Identifiers

PMID38095842
OpenAlexW4389740964

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.