Evidence map›Paper›PMID 38095727›Full record

ArticlePlanta2023

EasyClick: an improved system for confocal microscopy of live roots with a user-optimized sample holder.

Kateřina Kaduchová, Vratislav Čmiel, Veronika Koláčková, Ales Pecinka

Abstract read
In one paragraph

Article in Planta, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Frontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Kateřina KaduchováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 779 00, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0001-9259-5942
Vratislav ČmielDepartment of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Technická 3082/12, 61600, Brno, Czech Republic. cmiel@vut.cz.ORCID http://orcid.org/0000-0002-0441-9840
Veronika KoláčkováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 779 00, Olomouc, Czech Republic.ORCID http://orcid.org/0000-0002-5416-8947
Ales PecinkaCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Šlechtitelů 31, 779 00, Olomouc, Czech Republic. pecinka@ueb.cas.cz.ORCID http://orcid.org/0000-0001-9277-1766

Funding

Grantová Agentura České Republiky 21-02929S
6 · The paper itself

Abstract

MAIN

conclusionWe describe a user-optimized sample holder EasyClick for medium-sized plants that reduces root side movements and thus greatly extends the duration of live cell confocal microscopy. Preparation and mounting of the samples are key factors for successful live cell microscopy. To acquire biologically relevant data, it is necessary to minimize stress and avoid physical damage to plant tissues during the installation of the sample into the microscope. This is challenging, particularly when the whole plant is mounted as the living sample needs to be properly anchored in the microscopic system to obtain high-quality and high-resolution data. Here, we present a user-optimized sample holder EasyClick for live cell inverted confocal microscopic analysis of plant roots with diameters from 0.3 to 0.7 mm. The EasyClick holder was tested on an inverted confocal microscope using germinating plants of several cereals. Nevertheless, it can be directly used on other types of inverted microscopes from various producers and on different plant species. The EasyClick holder effectively restricts root lateral and vertical movements. This greatly improves the conditions for time-lapse microscopy of the samples of interest.

Indexed as

Plant RootsMicroscopy, ConfocalBarleyConfocal microscopyEasyClickGrowthHordeum vulgareLive cell imagingPlantRoot

Identifiers

PMID38095727
PMCPMC10721658

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.