Evidence map›Paper›PMID 38095693›Full record

ArticleArchives of microbiology2023

Culturomics reveals a hidden world of vaginal microbiota with the isolation of 206 bacteria from a single vaginal sample.

Linda Abou Chacra, Amel Benatmane, Rim Iwaza, Claudia Ly, Stéphane Alibar, Nicholas Armstrong, Oleg Mediannikov, Florence Bretelle, Florence Fenollar

Open access · hybridAbstract read
In one paragraph

Article in Archives of microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. High-throughput single-cell isolation ofMicrobiology spectrum · 2026
    Article
  2. Review
  3. Review
  4. Influence of cervicovaginal microbiota onMicrobial cell (Graz, Austria) · 2025
    Review
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Linda Abou ChacraAix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.
Amel BenatmaneAix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.
Rim IwazaIHU-Méditerranée Infection, Marseille, France.
Claudia LyAix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France.
Stéphane AlibarIHU-Méditerranée Infection, Marseille, France.
Nicholas ArmstrongAix Marseille Univ, IRD, AP-HM, MEPHI, Marseille, France.
Oleg MediannikovIHU-Méditerranée Infection, Marseille, France.
Florence BretelleIHU-Méditerranée Infection, Marseille, France.
Florence FenollarAix Marseille Univ, IRD, AP-HM, SSA, VITROME, Marseille, France. florence.fenollar@univ-amu.fr.
Méditerranée Infection Foundation · FRAix-Marseille Université · FRInstitut de Recherche pour le Développement · FR

Funding

Agence Nationale de la Recherche ANR-10-IAHU-03
6 · The paper itself

Abstract

The composition of the vaginal microbiota is known to be influenced by various factors and to be associated with several disorders affecting women's health. Although metagenomics is currently a widely used method for studying the human microbiota, it has certain limitations, such as a lack of information on bacterial viability. It is therefore important to use culture-based methods such as culturomics. Here, we used 35 different culture conditions to comprehensively characterize the vaginal bacterial diversity of a single woman's flora. A total of 206 bacterial species, belonging to six phyla (for a little more than half to Firmicutes, followed mainly by Actinobacteria, Bacteroidetes, and Proteobacteria) and 45 families, and 2 fungal species were cultivated. While several species of lactobacilli have been isolated, a wide variety of other bacteria were also separated, including 65 never reported before in vaginal flora, including a new bacterial species, Porphyromonas vaginalis sp. nov. Extensive culture-based methods are essential to establish a comprehensive, evidence-based repertoire of bacterial viability. If combined with molecular methods, they can provide a much more thorough understanding of the vaginal microbiota and fulfil the unknown part of metagenomic studies.

Indexed as

BacteriaMicrobiotaBacillotaBacteroidetesFemaleHumansVaginaAnaerobesCulture conditionsCulturomicsMALDI-TOFPorphyromonas vaginalisVaginal microbiota

Identifiers

PMID38095693
PMCPMC10721685
OpenAlexW4389741672

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.