Evidence map›Paper›PMID 38094619›Full record

ArticleAdvances in virology2023

High Transmission Rates of Early Omicron Subvariant BA.2 in Bangkok, Thailand.

Sininat Petcharat, Ananporn Supataragul, Piyapha Hirunpatrawong, Pattama Torvorapanit, Chonticha Klungthong, Piyawan Chinnawirotpisan, Sasiprapa Ninwattana, Nattakarn Thippamom, Leilani Paitoonpong, Gompol Suwanpimolkul and 12 more

Abstract read
In one paragraph

Article in Advances in virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Observational
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Sininat PetcharatThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-5336-1833
Ananporn SupataragulThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0001-5658-5691
Piyapha HirunpatrawongDepartment of Medicine, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-4803-8046
Pattama TorvorapanitThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0001-9507-6339
Chonticha KlungthongDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.ORCID https://orcid.org/0000-0001-5058-8912
Piyawan ChinnawirotpisanDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.ORCID https://orcid.org/0000-0001-8472-2120
Sasiprapa NinwattanaThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-1398-3929
Nattakarn ThippamomThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-2354-820X
Leilani PaitoonpongThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-9782-4369
Gompol SuwanpimolkulThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-5199-7440
Watsamon JantarabenjakulThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0003-4251-3499
Rome BuathongDepartment of Disease Control, Ministry of Public Health, Muang, Nonthaburi 11000, Thailand.ORCID https://orcid.org/0000-0001-9711-911X
Khajohn JoonlasakDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.ORCID https://orcid.org/0000-0002-8114-5804
Wudtichai ManasatienkijDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.ORCID https://orcid.org/0000-0001-6925-9596
Khwankamon RattanatumhiThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-9260-5108
Napaporn ChantasrisawadThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-2916-555X
Nuntana ChumpaThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0009-0007-4159-0026
Thomas S CotroneDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.ORCID https://orcid.org/0000-0002-4016-7572
Stefan FernandezDepartment of Virology, Armed Forces Research Institute of Medical Sciences, Bangkok 10400, Thailand.ORCID https://orcid.org/0000-0001-8471-6265
Sira SriswasdiCenter of Excellence in Computational Molecular Biology, Faculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0002-4117-3632
Supaporn WacharapluesadeeThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0001-7636-1900
Opass PutcharoenThai Red Cross Emerging Infectious Diseases Clinical Center, King Chulalongkorn Memorial Hospital, Bangkok 10330, Thailand.ORCID https://orcid.org/0000-0001-8444-8512

Funding

Understanding Risk of Zoonotic Virus Emergence in EID Hotspots of Southeast AsiaU01AI151797 · NIAID · ECOHEALTH ALLIANCE, INC. · PI DASZAK, PETER · 2020 to 2023
$6.0M
NIAID NIH HHS U01 AI151797
6 · The paper itself

Abstract

The emergence of Omicron as the fifth variant of concern within the SARS-CoV-2 pandemic in late 2021, characterized by its rapid transmission and distinct spike gene mutations, underscored the pressing need for cost-effective and efficient methods to detect viral variants, especially given their evolving nature. This study sought to address this need by assessing the effectiveness of two SARS-CoV-2 variant classification platforms based on RT-PCR and mass spectrometry. The primary aim was to differentiate between Delta, Omicron BA.1, and Omicron BA.2 variants using 618 COVID-19-positive samples collected from Bangkok patients between November 2011 and March 2022. The analysis revealed that both BA.1 and BA.2 variants exhibited significantly higher transmission rates, up to 2-3 times, when compared to the Delta variant. This research presents a cost-efficient approach to virus surveillance, enabling a quantitative evaluation of variant-specific public health implications, crucial for informing and adapting public health strategies.

Identifiers

PMID38094619
PMCPMC10719011

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.