Evidence map›Paper›PMID 38093190›Full record

ArticleBMC genomic data2023

Chromosome-scale genome assembly of the 'Munstead' cultivar of Lavandula angustifolia.

John P Hamilton, Brieanne Vaillancourt, Joshua C Wood, Haiyan Wang, Jiming Jiang, Douglas E Soltis, C Robin Buell, Pamela S Soltis

Abstract read
In one paragraph

Article in BMC genomic data, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

John P HamiltonCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Brieanne VaillancourtCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Joshua C WoodCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA.
Haiyan WangDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Jiming JiangDepartment of Plant Biology, Michigan State University, East Lansing, MI, USA.
Douglas E SoltisDepartment of Biology, University of Florida, Gainesville, FL, USA. dsoltis@ufl.edu.
C Robin BuellCenter for Applied Genetic Technologies, University of Georgia, Athens, GA, USA. Robin.Buell@uga.edu.
Pamela S SoltisDepartment of Biology, University of Florida, Gainesville, FL, USA. psoltis@flmnh.ufl.edu.

Funding

Directorate for Biological Sciences IOS-1444499
6 · The paper itself

Abstract

objectivesLavandula angustifolia (English lavender) is commercially important not only as an ornamental species but also as a major source of fragrances. To better understand the genomic basis of chemical diversity in lavender, we sequenced, assembled, and annotated the 'Munstead' cultivar of L. angustifolia. DATA DESCRIPTION: A total of 80 Gb of Oxford Nanopore Technologies reads was used to assemble the 'Munstead' genome using the Canu genome assembler software. Following multiple rounds of error correction and scaffolding using Hi-C data, the final chromosome-scale assembly represents 795,075,733 bp across 25 chromosomes with an N50 scaffold length of 31,371,815 bp. Benchmarking Universal Single Copy Orthologs analysis revealed 98.0% complete orthologs, indicative of a high-quality assembly representative of genic space. Annotation of protein-coding sequences revealed 58,702 high-confidence genes encoding 88,528 gene models. Access to the 'Munstead' genome will permit comparative analyses within and among lavender accessions and provides a pivotal species for comparative analyses within Lamiaceae.

Indexed as

LavandulaChromosomesGenomeGenomicsOpen Reading FramesEssential oilLamiaceaeTerpene

Identifiers

PMID38093190
PMCPMC10717065

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.