ArticleNature2023
Brain-wide correspondence of neuronal epigenomics and distant projections.
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Article in Nature, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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0cells of the map it votes in
37citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
What it found
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Who cites it
37 citing papers in PubMed, 56 citations in OpenAlex.
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- Brain Spatial Genomics Atlases.Genes · 2026Review
- Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain.Cell reports · 2026Article
- From identity to function: unveiling the cellular complexity of hypothalamic feeding circuits.Reviews in endocrine & metabolic disorders · 2026Review
- A Community Standard Multispecies Cell Atlas of the Basal Ganglia.bioRxiv : the preprint server for biology · 2026Article
- A transcriptomic axis aligns with in vivo functional dynamics in hippocampal inhibitory circuits.bioRxiv : the preprint server for biology · 2026Article
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- Organization of mouse prefrontal cortex subnetwork revealed by spatial single-cell multi-omic analysis of SPIDER-Seq.National science review · 2026Article
- Integrative Single-Cell Epigenomic Atlas Annotates the Regulatory Genome of the Adult Mouse Brain.bioRxiv : the preprint server for biology · 2026Article
- An Integrated Single-Cell and Epigenomic Resource for Comparative Analysis of the Basal Ganglia.bioRxiv : the preprint server for biology · 2026Article
- Reframing sepsis research through translational integrative models.Journal of translational internal medicine · 2026Article
- Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling.bioRxiv : the preprint server for biology · 2026Article
- A Multimodal Atlas Reveals the Anatomical Distribution of Medium Spiny Neuron Subtypes and a Novel RGS6+ Population in the Primate Striatum.bioRxiv : the preprint server for biology · 2025Article
- Review
- Comprehensive Brain-wide Mapping of Afferent and Efferent Nuclei Associated with the Heart in the Mouse.Neuroscience bulletin · 2025Article
- An integrated single-nucleus and spatial transcriptomics atlas reveals the molecular landscape of the human hippocampus.Nature neuroscience · 2025Article
- Unfolding neural diversity: how dynamic three-dimensional genome architecture regulates brain function and disease.Molecular psychiatry · 2025Review
Corrections and comments
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Authors and funding
51 authors at 6 institutions in 2 countries.
Jingtian Zhou *Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-2060-1922
Zhuzhu Zhang *Genomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
May WuGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Hanqing LiuGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Yan PangSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Anna BartlettGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0001-7059-4033
Zihao PengSchool of Mathematics and Computer Science, Nanchang University, Nanchang, China.
Wubin DingGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Angeline RivkinGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Will N LagosSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Elora WilliamsMolecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Cheng-Ta LeePeptide Biology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Paula Assakura MiyazakiSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-1295-8710
Andrew AldridgeGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Qiurui ZengGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
J L Angelo SalindaSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Naomi ClaffeyFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Michelle LiemFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0009-0004-0542-7166
Conor FitzpatrickFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Lara BoggemanFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Zizhen YaoAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-9361-5607
Kimberly A SmithAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-3142-1970
Bosiljka TasicAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-6861-4506
Jordan AltshulGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Mia A KenworthyGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Cynthia ValadonGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-1655-6903
Joseph R NeryGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-0153-5659
Rosa G CastanonGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-1791-002X
Neelakshi S PatneSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Minh VuSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Mohammad RashidSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Matthew JacobsSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Tony ItoSystems Neurobiology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Julia OsteenComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Nora EmersonComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0001-7344-4487
Jasper LeeComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-2086-1441
Silvia ChoComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Jon RinkComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0009-0007-4651-0443
Hsiang-Hsuan HuangMolecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.
António Pinto-DuartecComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-2215-7653
Bertha DominguezPeptide Biology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Jared B SmithMolecular Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-0273-4898
Carolyn O'ConnorFlow Cytometry Core Facility, The Salk Institute for Biological Studies, La Jolla, CA, USA.
Hongkui ZengAllen Institute for Brain Science, Seattle, WA, USA.ORCID 0000-0002-0326-5878
Shengbo ChenHenan Engineering Research Center of Intelligent Technology and Application, Henan University, Kaifeng, China.
Kuo-Fen LeePeptide Biology Laboratories, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0003-2224-2708
Eran A MukamelDepartment of Cognitive Science, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0003-3203-9535
Xin JinCenter for Motor Control and Disease, Key Laboratory of Brain Functional Genomics, East China Normal University, Shanghai, China.ORCID 0000-0002-1106-4013
M Margarita BehrensComputational Neurobiology Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID 0000-0002-7168-8186
Joseph R EckerGenomic Analysis Laboratory, The Salk Institute for Biological Studies, La Jolla, CA, USA. ecker@salk.edu.ORCID 0000-0001-5799-5895
Edward M CallawayDivision of Biological Sciences, University of California San Diego, La Jolla, CA, USA. callaway@salk.edu.ORCID 0000-0002-6366-5267
Salk Institute for Biological Studies · USAllen Institute for Brain Science · USHenan University · CNNanchang University · CNNew York University Shanghai · CNUniversity of California San Diego · US
Funding
Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2017 to 2021
$64.7MMolecular SignaturesU19MH114831 · NIMH · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI CALLAWAY, EDWARD M, ECKER, JOSEPH R · 2017 to 2021
$24.6MCircuit-specific cell types in aging and Alzheimer's diseaseU01AG076805 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI BEHRENS, MARIA MARGARITA, LEE, KUO-FEN · 2022 to 2025
$11.3MAtlas for neuronal and glial cell types selectively vulnerable to proteinopathies during progression of Alzheimer's DiseaseR01AG082151 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI KUO-FEN LEE · 2023 to 2026
$8.4MOrganization and Function of Visual Cortical Feedback SystemsR01EY022577 · NEI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI EDWARD M CALLAWAY · 2012 to 2026
$8.0MGenetic models of sporadic Alzheimers Disease in the marmosetR24AG073205 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LEE, KUO-FEN · 2021 to 2024
$5.7MHigh-throughput mapping of selectively vulnerable cell types and projections in aging and Alzheimer's DiseaseRF1AG064049 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LEE, KUO-FEN, ZADOR, ANTHONY M · 2019 to 2019
$4.7MBD FACSAria Fusion for Flow Cytometry Core FacilityS10OD023689 · OD · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI ZHENG, YE · 2018 to 2018
$530kNEI NIH HHS R01 EY022577NIA NIH HHS R01 AG082151NIA NIH HHS R24 AG073205NIA NIH HHS RF1 AG064049NIA NIH HHS U01 AG076805NIH HHS S10 OD023689NIMH NIH HHS U19 MH114830NIMH NIH HHS U19 MH114831
Abstract
Single-cell analyses parse the brain's billions of neurons into thousands of 'cell-type' clusters residing in different brain structures
Indexed as
BrainEpigenomicsNeural PathwaysNeuronsAmygdalaAnimalsConsensus SequenceDatasets as TopicGene Expression ProfilingHypothalamusMesencephalonMiceNeurotransmitter AgentsRegulatory Sequences, Nucleic AcidRhombencephalonSingle-Cell AnalysisNeurotransmitter AgentsTranscription Factors
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