Evidence map›Paper›PMID 38092658›Full record

ArticleJournal of virology2023

Gene duplication as a major force driving the genome expansion in some giant viruses.

Talita B Machado, Agnello C R Picorelli, Bruna L de Azevedo, Isabella L M de Aquino, Victória F Queiroz, Rodrigo A L Rodrigues, João Pessoa Araújo, Leila S Ullmann, Thiago M Dos Santos, Rafael E Marques and 11 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
6.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. The GC% landscape of the Nucleocytoviricota.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  13. Genomics and evolutionary analysis ofJournal of virology · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Widespread Horizontal Gene Transfer Among Animal Viruses.bioRxiv : the preprint server for biology · 2024
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 4 countries.

Talita B MachadoLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.
Agnello C R PicorelliLaboratório de Genômica Evolutiva, Departamento de Genética, Evolução, Microbiologia e Imunologia, Instituto de Biologia, Universidade Estadual de Campinas (UNICAMP), Campinas, Brazil.
Bruna L de AzevedoLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.
Isabella L M de AquinoLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.
Victória F QueirozLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.
Rodrigo A L RodriguesLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.ORCID 0000-0001-7148-4012
João Pessoa AraújoLaboratório de Virologia, Departamento de Microbiologia e Imunologia, Instituto de Biotecnologia, Universidade Estadual Paulista (UNESP), Botucatu, Brazil.
Leila S UllmannLaboratório de Virologia, Departamento de Microbiologia e Imunologia, Instituto de Biotecnologia, Universidade Estadual Paulista (UNESP), Botucatu, Brazil.
Thiago M Dos SantosDel-Bem Lab, Departamento de Botânica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.
Rafael E MarquesBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Samuel L GuimarãesBrazilian Biosciences National Laboratory (LNBio), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, Brazil.
Ana Cláudia S P AndradeCentre de Recherche du Centre Hospitalier Universitaire de Québec- Université Laval, Laval, Québec, Canada.
Juliana S GularteLaboratório de Microbiologia Molecular, Universidade Feevale, Novo Hamburgo, Brazil.
Meriane DemolinerLaboratório de Microbiologia Molecular, Universidade Feevale, Novo Hamburgo, Brazil.
Micheli FilippiLaboratório de Microbiologia Molecular, Universidade Feevale, Novo Hamburgo, Brazil.
Vyctoria M A G PereiraLaboratório de Microbiologia Molecular, Universidade Feevale, Novo Hamburgo, Brazil.
Fernando R SpilkiLaboratório de Microbiologia Molecular, Universidade Feevale, Novo Hamburgo, Brazil.
Mart KrupovicArchaeal Virology Unit, Institut Pasteur, Université Paris Cité, CNRS UMR6047, Paris, France.
Frank O AylwardDepartment of Biological Sciences, Virginia Tech, Blacksburg, Virginia, USA.ORCID 0000-0002-1279-4050
Luiz-Eduardo Del-BemDel-Bem Lab, Departamento de Botânica, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.ORCID 0000-0001-8472-4476
Jônatas S AbrahãoLaboratório de Vírus, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais (UFMG), Belo Horizonte, Brazil.ORCID 0000-0001-9420-1791
Universidade Federal de Minas Gerais · BRUniversidade Feevale · BRBrazilian Center for Research in Energy and Materials · BRUniversidade Estadual Paulista (Unesp) · BRCentre hospitalier universitaire de Québec · CACentre National de la Recherche Scientifique · FRUniversidade Estadual de Campinas (UNICAMP) · BRVirginia Tech · US

Funding

Coevolutionary Dynamics and Gene Exchange Between Nucleo-Cytoplasmic Large DNA Viruses and EukaryotesR35GM147290 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI Frank O'Neill Aylward · 2022 to 2026
$1.9M
NIGMS NIH HHS R35 GM147290
6 · The paper itself

Abstract

importanceGiant viruses are noteworthy not only due to their enormous particles but also because of their gigantic genomes. In this context, a fundamental question has persisted: how did these genomes evolve? Here we present the discovery of cedratvirus pambiensis, featuring the largest genome ever described for a cedratvirus. Our data suggest that the larger size of the genome can be attributed to an unprecedented number of duplicated genes. Further investigation of this phenomenon in other viruses has illuminated gene duplication as a key evolutionary mechanism driving genome expansion in diverse giant viruses. Although gene duplication has been described as a recurrent event in cellular organisms, our data highlights its potential as a pivotal event in the evolution of gigantic viral genomes.

Indexed as

Evolution, MolecularGene DuplicationGiant VirusesGenome, ViralPhylogenycedratvirus pambiensisgenome expansiongiant virusNucleocytoviricotaparalogous genesPithoviridae

Identifiers

PMID38092658
PMCPMC10734413
OpenAlexW4388845641

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.