Evidence map›Paper›PMID 38092657›Full record

ArticleJournal of clinical microbiology2023

Comparison of next generation technologies and bioinformatics pipelines for capsular typing of

Desiree Henares, Stephanie W Lo, Amaresh Perez-Argüello, Alba Redin, Pilar Ciruela, Juan Jose Garcia-Garcia, Pedro Brotons, Jose Yuste, Raquel Sá-Leão, Carmen Muñoz-Almagro

Open access · hybridAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Accurate serotype identification ofJournal of clinical microbiology · 2026
    Article
  2. Identification ofJournal of proteome research · 2025
    Article
  3. Article
  4. Article
  5. Genomic surveillance of invasiveMicrobial genomics · 2025
    Article
  6. Article
  7. Article
  8. Observational
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Desiree HenaresDepartment of RDI Microbiology, Hospital Sant Joan de Déu , Barcelona, Spain.ORCID 0000-0003-2631-2718
Stephanie W LoParasites and Microbes Programme, Wellcome Sanger Institute , Hinxton, United Kingdom.ORCID 0000-0002-2182-0222
Amaresh Perez-ArgüelloDepartment of RDI Microbiology, Hospital Sant Joan de Déu , Barcelona, Spain.
Alba RedinDepartment of RDI Microbiology, Hospital Sant Joan de Déu , Barcelona, Spain.
Pilar CiruelaCIBER Center for Epidemiology and Public Health (CIBERESP), Instituto de Salud Carlos III , Madrid, Spain.
Juan Jose Garcia-GarciaCIBER Center for Epidemiology and Public Health (CIBERESP), Instituto de Salud Carlos III , Madrid, Spain.
Pedro BrotonsDepartment of RDI Microbiology, Hospital Sant Joan de Déu , Barcelona, Spain.
Jose YusteSpanish Pneumococcal Reference Laboratory, National Center for Microbiology, Instituto de Salud Carlos III , Madrid, Spain.ORCID 0000-0001-7996-0837
Raquel Sá-LeãoLaboratory of Molecular Microbiology of Human Pathogens, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA) , Oeiras, Portugal.ORCID 0000-0001-9804-827X
Carmen Muñoz-AlmagroDepartment of RDI Microbiology, Hospital Sant Joan de Déu , Barcelona, Spain.ORCID 0000-0001-5586-404X
Hospital Sant Joan de Déu Barcelona · ESInstituto de Salud Carlos III · ESUniversidade Nova de Lisboa · PTWellcome Sanger Institute · GB

Funding

Fundación GodiaMEC | Instituto de Salud Carlos III (ISCIII) FI17/00248MEC | Instituto de Salud Carlos III (ISCIII) PI19/00104Ministerio de Ciencia e Innovación (MCIN) PID2020-119298RB-100Pfizer (Pfizer Inc.)
6 · The paper itself

Abstract

Whole genome sequencing (WGS)-based approaches for pneumococcal capsular typing have become an alternative to serological methods.

Indexed as

Pneumococcal InfectionsStreptococcus pneumoniaeChildComputational BiologyHumansSerogroupSerotypingWhole Genome Sequencingin silico serotypingONTPathogenwatchpneumococcivalidationWGS

Identifiers

PMID38092657
PMCPMC10729682
OpenAlexW4388862175

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.