Evidence map›Paper›PMID 38092408›Full record

ArticleMicrobes and environments2023

Transcriptional Regulation of Methanol Dehydrogenases in the Methanotrophic Bacterium Methylococcus capsulatus Bath by Soluble and Insoluble Lanthanides.

Ruoyun Xie, Motoko Takashino, Kensuke Igarashi, Wataru Kitagawa, Souichiro Kato

Open access · diamondAbstract read
In one paragraph

Article in Microbes and environments, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. A promoter library for tuning gene expression inFrontiers in bioengineering and biotechnology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ruoyun XieDivision of Applied Bioscience, Graduate School of Agriculture, Hokkaido University.
Motoko TakashinoBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology.
Kensuke IgarashiBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology.
Wataru KitagawaDivision of Applied Bioscience, Graduate School of Agriculture, Hokkaido University.
Souichiro KatoDivision of Applied Bioscience, Graduate School of Agriculture, Hokkaido University.
National Institute of Advanced Industrial Science and Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The effects of soluble and insoluble lanthanides on gene expression in Methylococcus capsulatus Bath were investigated. Genes for lanthanide-containing methanol dehydrogenases (XoxF-MDHs) and their calcium-containing counterparts (MxaFI-MDHs) were up- and down-regulated, respectively, by supplementation with soluble lanthanide chlorides, indicating that M. capsulatus has the "lanthanide switch" observed in other methanotrophs. Insoluble lanthanide oxides also induced the lanthanide switch and were dissolved by the spent medium of M. capsulatus, suggesting the presence of lanthanide-chelating compounds. A transcriptome ana-lysis indicated that a gene cluster for the synthesis of an enterobactin-like metal chelator contributed to the dissolution of insoluble lanthanides.

Indexed as

Lanthanoid Series ElementsMethylococcus capsulatusBacterial ProteinsMethaneMethanolBacterial ProteinsLanthanoid Series ElementsMethaneMethanolchelator compoundsgene expressionlanthanidesmethanol dehydrogenasemethanotroph

Identifiers

PMID38092408
PMCPMC10728633
OpenAlexW4389541273

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.