Evidence map›Paper›PMID 38089759›Full record

ArticleCancer innovation2022

Identification of prognostic indicators, diagnostic markers, and possible therapeutic targets among LIM homeobox transcription factors in breast cancer.

Pingping Gao, Na Sun, Tingting Zhao, Yuanyuan Sun, Jing Gu, Dandan Ma, Hao Tian, Zaihui Peng, Yi Zhang, Fei Han and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Cancer innovation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Pingping GaoBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.
Na SunBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.
Tingting ZhaoBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.
Yuanyuan SunInstitute of Toxicology, College of Preventive Medicine Army Medical University Chongqing China.
Jing GuInstitute of Toxicology, College of Preventive Medicine Army Medical University Chongqing China.
Dandan MaBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.
Hao TianBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.
Zaihui PengBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.
Yi ZhangBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.
Fei HanDepartment of Toxicology, School of Public Health Chongqing Medical University Chongqing China.ORCID 0000-0002-0265-5487
Xiaowei QiBreast and Thyroid Surgery, Southwest Hospital Army Medical University Chongqing China.ORCID 0000-0002-5876-4957
Army Medical University · CNChongqing Public Health Medical Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Breast cancer (BRCA) is the most common malignant tumor among women worldwide. Despite advances in treatment, many patients still die from a lack of effective diagnostic and prognostic markers and powerful therapeutic targets. LIM homeobox genes (LHXs) play vital roles in regulating the development of various organisms. However, there are limited reports regarding their roles in the diagnosis, prognosis, and treatment of BRCA. Methods: UALCAN, Kaplan-Meier plotter, cBioPortal, GeneMANIA, STRING, DAVID 6.8, TRRUST v2, LinkedOmics, and TIMER were utilized to analyze differential expression, prognostic value, genetic alteration, neighbor gene network, transcription factor targets, kinase targets, and immune cell infiltration of LHXs in BRCA patients. Results: LHX gene expression patterns are clear in BRCA and its different subtypes. Further analyses indicated that this altered expression is possibly affected by genetic and/or epigenetic changes. The prognostic and diagnostic values of certain LHXs are unique to different BRCA subtypes. LHXs are mainly involved in the regulation of differentiation and development, and their neighbor genes are primarily involved in cancer-related pathways. Moreover, most LHXs are closely correlated with immune cell infiltration. Furthermore, LHXs may exert their functions by regulating a series of transcription factor and kinase targets. Conclusions: LHXs are unique diagnostic and prognostic markers and participate in cancer through different signaling pathways and/or regulatory mechanisms in BRCA. This study provides potential applications of LHXs for the diagnosis, prognosis, and treatment of BRCA and its different subtypes.

Indexed as

breast cancerdiagnostic and prognostic markersdifferent subtypesLIM homeobox genesmolecular mechanism

Identifiers

PMID38089759
PMCPMC10686140
OpenAlexW4297360074

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.