Evidence map›Paper›PMID 38089643›Full record

ArticleFrontiers in radiology2023

Factors affecting the labelling accuracy of brain MRI studies relevant for deep learning abnormality detection.

Matthew Benger, David A Wood, Sina Kafiabadi, Aisha Al Busaidi, Emily Guilhem, Jeremy Lynch, Matthew Townend, Antanas Montvila, Juveria Siddiqui, Naveen Gadapa and 4 more

Abstract read
In one paragraph

Article in Frontiers in radiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Matthew BengerDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.
David A WoodSchool of Biomedical Engineering & Imaging Sciences, Kings College London, London, United Kingdom.
Sina KafiabadiDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.
Aisha Al BusaidiDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.
Emily GuilhemDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.
Jeremy LynchDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.
Matthew TownendSchool of Biomedical Engineering & Imaging Sciences, Kings College London, London, United Kingdom.
Antanas MontvilaSchool of Biomedical Engineering & Imaging Sciences, Kings College London, London, United Kingdom.
Juveria SiddiquiDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.
Naveen GadapaDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.
Gareth BarkerInstitute of Psychiatry, Psychology & Neuroscience, Kings College London, London, United Kingdom.
Sebastian OurselinSchool of Biomedical Engineering & Imaging Sciences, Kings College London, London, United Kingdom.
James H ColeInstitute of Psychiatry, Psychology & Neuroscience, Kings College London, London, United Kingdom.
Thomas C BoothDepartment of Neuroradiology, Kings College Hospital, London, United Kingdom.

Funding

Medical Research Council MR/W021684/1Wellcome Trust
6 · The paper itself

Abstract

Unlocking the vast potential of deep learning-based computer vision classification systems necessitates large data sets for model training. Natural Language Processing (NLP)-involving automation of dataset labelling-represents a potential avenue to achieve this. However, many aspects of NLP for dataset labelling remain unvalidated. Expert radiologists manually labelled over 5,000 MRI head reports in order to develop a deep learning-based neuroradiology NLP report classifier. Our results demonstrate that binary labels (normal vs. abnormal) showed high rates of accuracy, even when only two MRI sequences (T2-weighted and those based on diffusion weighted imaging) were employed as opposed to all sequences in an examination. Meanwhile, the accuracy of more specific labelling for multiple disease categories was variable and dependent on the category. Finally, resultant model performance was shown to be dependent on the expertise of the original labeller, with worse performance seen with non-expert vs. expert labellers.

Indexed as

computer vision systemdeep learninglabellingMRIneuroradiology

Identifiers

PMID38089643
PMCPMC10711054

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.