Evidence map›Paper›PMID 38088897›Full record

ArticleActa crystallographica. Section D, Structural biology2024

The TR-icOS setup at the ESRF: time-resolved microsecond UV-Vis absorption spectroscopy on protein crystals.

Sylvain Engilberge, Nicolas Caramello, Sergei Bukhdruker, Martin Byrdin, Thierry Giraud, Philippe Jacquet, Damien Scortani, Rattana Biv, Hervé Gonzalez, Antonin Broquet and 11 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. TheJournal of applied crystallography · 2025
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. The time revolution in macromolecular crystallography.Structural dynamics (Melville, N.Y.) · 2024
    Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Sylvain EngilbergeUniversité Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale (IBS), 71 Avenue des Martyrs, CS 10090, 38044 Grenoble CEDEX 9, France.ORCID 0000-0001-8680-6790
Nicolas CaramelloEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0003-0025-0213
Sergei BukhdrukerEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0002-0157-532X
Martin ByrdinUniversité Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale (IBS), 71 Avenue des Martyrs, CS 10090, 38044 Grenoble CEDEX 9, France.ORCID 0000-0002-6389-8714
Thierry GiraudEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.
Philippe JacquetUniversité Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale (IBS), 71 Avenue des Martyrs, CS 10090, 38044 Grenoble CEDEX 9, France.
Damien ScortaniEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.
Rattana BivEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.
Hervé GonzalezEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.
Antonin BroquetEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.
Peter van der LindenPSCM (Partnership for Soft Condensed Matter), ESRF, 71 Avenue des Martyrs, 38000 Grenoble, France.ORCID 0000-0002-3481-0787
Samuel L RoseEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0003-4824-4066
David FlotEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0001-6639-7205
Taras BalandinInstitute of Biological Information Processing (IBI-7: Structural Biochemistry), Forschungszentrum Jülich, Jülich, Germany.
Valentin GordeliyUniversité Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale (IBS), 71 Avenue des Martyrs, CS 10090, 38044 Grenoble CEDEX 9, France.ORCID 0000-0001-5782-5896
J Mia Lahey-RudolphTechnische Hochschule Lübeck - University of Applied Sciences, Mönkhofer Weg 239, 23562 Lübeck, Germany.ORCID 0000-0001-5279-7267
Manfred RoessleTechnische Hochschule Lübeck - University of Applied Sciences, Mönkhofer Weg 239, 23562 Lübeck, Germany.
Daniele de SanctisEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0003-0391-8290
Gordon A LeonardEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0001-5030-0122
Christoph Mueller-DieckmannEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0003-3625-2747
Antoine RoyantEuropean Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38403 Grenoble CEDEX 9, France.ORCID 0000-0002-1919-8649

Funding

Bundesministerium für Bildung und Forschung 05K19FM1
6 · The paper itself

Abstract

The technique of time-resolved macromolecular crystallography (TR-MX) has recently been rejuvenated at synchrotrons, resulting in the design of dedicated beamlines. Using pump-probe schemes, this should make the mechanistic study of photoactive proteins and other suitable systems possible with time resolutions down to microseconds. In order to identify relevant time delays, time-resolved spectroscopic experiments directly performed on protein crystals are often desirable. To this end, an instrument has been built at the icOS Lab (in crystallo Optical Spectroscopy Laboratory) at the European Synchrotron Radiation Facility using reflective focusing objectives with a tuneable nanosecond laser as a pump and a microsecond xenon flash lamp as a probe, called the TR-icOS (time-resolved icOS) setup. Using this instrument, pump-probe spectra can rapidly be recorded from single crystals with time delays ranging from a few microseconds to seconds and beyond. This can be repeated at various laser pulse energies to track the potential presence of artefacts arising from two-photon absorption, which amounts to a power titration of a photoreaction. This approach has been applied to monitor the rise and decay of the M state in the photocycle of crystallized bacteriorhodopsin and showed that the photocycle is increasingly altered with laser pulses of peak fluence greater than 100 mJ cm

Indexed as

ProteinsSynchrotronsCrystallographyLightSpectrum AnalysisProteinsbacteriorhodopsinin crystallo optical spectroscopyphotoactivable proteinspump–probe spectroscopyserial synchrotron crystallography

Identifiers

PMID38088897
PMCPMC10833346

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.