Evidence map›Paper›PMID 38088885›Full record

ArticleAnimal biotechnology2024

Genome-wide selection signatures address trait specific candidate genes in cattle indigenous to arid regions of India.

Nidhi Sukhija, Anoop Anand Malik, Joel M Devadasan, Aishwarya Dash, Kangabam Bidyalaxmi, D Ravi Kumar, M Kousalaya Devi, Anjali Choudhary, K K Kanaka, Rekha Sharma and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Animal biotechnology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Genomic insights into the recent evolution and biodiversity of Italian sheep breeds.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Nidhi SukhijaICAR-National Dairy Research Institute, Karnal, India.ORCID 0000-0002-5616-2186
Anoop Anand MalikTERI School of Advanced Studies, Delhi, India.ORCID 0000-0002-7486-5061
Joel M DevadasanICAR-National Dairy Research Institute, Karnal, India.ORCID 0000-0002-6245-6455
Aishwarya DashICAR-National Dairy Research Institute, Karnal, India.ORCID 0000-0002-3072-6246
Kangabam BidyalaxmiICAR-National Dairy Research Institute, Karnal, India.ORCID 0000-0002-5058-6244
D Ravi KumarICAR-National Dairy Research Institute, Karnal, India.ORCID 0000-0002-2665-9159
M Kousalaya DeviICAR-National Dairy Research Institute, Karnal, India.
Anjali ChoudharyICAR-National Dairy Research Institute, Karnal, India.
K K KanakaICAR-National Dairy Research Institute, Karnal, India.ORCID 0000-0002-1397-6286
Rekha SharmaICAR-National Bureau of Animal Genetic Resources, Karnal, India.
Shashi Bhushan TripathiTERI School of Advanced Studies, Delhi, India.
Saket Kumar NiranjanICAR-National Bureau of Animal Genetic Resources, Karnal, India.
Jayakumar SivalingamICAR-National Bureau of Animal Genetic Resources, Karnal, India.ORCID 0000-0002-0042-6859
Archana VermaICAR-National Dairy Research Institute, Karnal, India.ORCID 0000-0002-0581-6581
National Dairy Research Institute · INNational Bureau of Animal Genetic Resources · INEnergy and Resources Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The peculiarity of Indian cattle lies in milk quality, resistance to diseases and stressors as well as adaptability. The investigation addressed selection signatures in Gir and Tharparkar cattle, belonging to arid ecotypes of India. Double digest restriction-site associated DNA sequencing (ddRAD-seq) yielded nearly 26 million high-quality reads from unrelated seven Gir and seven Tharparkar cows. In all, 19,127 high-quality SNPs were processed for selection signature analysis. An approach involving within-population composite likelihood ratio (CLR) statistics and between-population

Indexed as

GenomePolymorphism, Single NucleotideAnimalsCattleFemaleIndiaPhenotypeReproductionddRAD-seqGirselection signaturesSNPsTharparkar

Identifiers

PMID38088885
PMCPMC12674412
OpenAlexW4389670939

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.