Evidence map›Paper›PMID 38087988›Full record

ArticleNanoscale2024

Exploring the conformational dynamics of the SARS-CoV-2 SL4 hairpin by combining optical tweezers and base analogues.

Vinoth Sundar Rajan, Anna Wypijewska Del Nogal, Sune Levin, L Marcus Wilhelmsson, Fredrik Westerlund

Abstract read
In one paragraph

Article in Nanoscale, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Vinoth Sundar RajanDivision of Chemical Biology, Department of Life Sciences, Chalmers University of Technology, Gothenburg, SE-412 96, Sweden. fredrik.westerlund@chalmers.se.ORCID http://orcid.org/0000-0003-2513-9706
Anna Wypijewska Del NogalDivision of Chemistry and Biochemistry, Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg, SE-412 96, Sweden. marcus.wilhelmsson@chalmers.se.ORCID http://orcid.org/0000-0002-8667-9100
Sune LevinDivision of Chemical Biology, Department of Life Sciences, Chalmers University of Technology, Gothenburg, SE-412 96, Sweden. fredrik.westerlund@chalmers.se.
L Marcus WilhelmssonDivision of Chemistry and Biochemistry, Department of Chemistry and Chemical Engineering, Chalmers University of Technology, Gothenburg, SE-412 96, Sweden. marcus.wilhelmsson@chalmers.se.ORCID http://orcid.org/0000-0002-2193-6639
Fredrik WesterlundDivision of Chemical Biology, Department of Life Sciences, Chalmers University of Technology, Gothenburg, SE-412 96, Sweden. fredrik.westerlund@chalmers.se.ORCID http://orcid.org/0000-0002-4767-4868

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The parasitic nature of the SARS-CoV-2 virus demands selective packaging of its RNA genome (gRNA) from the abundance of other nucleic acids present in infected cells. Despite increasing evidence that stem-loop 4 (SL4) of the gRNA 5' UTR is involved in the initiation of this process by binding the nucleocapsid (N) protein, little is known about its conformational dynamics. Here, we unravel the stability, dynamics and (un)folding pathways of SL4 using optical tweezers and a base analogue, tC

Indexed as

COVID-19SARS-CoV-2Base SequenceHumansNucleic Acid ConformationOptical TweezersRNA, Guide, CRISPR-Cas SystemsRNA, ViralRNA, Guide, CRISPR-Cas SystemsRNA, Viral

Identifiers

PMID38087988
PMCPMC10763987

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.