Evidence map›Paper›PMID 38086870›Full record

ArticleNature communications2023

Phylogeny and molecular evolution of the first local monkeypox virus cluster in Guangdong Province, China.

Jianhai Yu, Xin Zhang, Jiajun Liu, Linlin Xiang, Shen Huang, Xiaoting Xie, Ling Fang, Yifan Lin, Meng Zhang, Linqing Wang and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Jianhai Yu *BSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China.ORCID 0000-0002-2986-8028
Xin Zhang *Institute of Microbiology, Center for Disease Control and Prevention of Guangdong Province, No. 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong Province, 511430, China.
Jiajun Liu *Institute of Microbiology, Center for Disease Control and Prevention of Guangdong Province, No. 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong Province, 511430, China.
Linlin XiangBSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China.
Shen HuangInstitute of Microbiology, Center for Disease Control and Prevention of Guangdong Province, No. 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong Province, 511430, China.
Xiaoting XieBSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China.
Ling FangInstitute of Microbiology, Center for Disease Control and Prevention of Guangdong Province, No. 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong Province, 511430, China.
Yifan LinBSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China.
Meng ZhangInstitute of Microbiology, Center for Disease Control and Prevention of Guangdong Province, No. 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong Province, 511430, China.
Linqing WangBSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China.
Jianfeng HeInstitute of Microbiology, Center for Disease Control and Prevention of Guangdong Province, No. 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong Province, 511430, China.ORCID 0000-0001-8136-2692
Bao ZhangBSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China.
Biao DiDepartment of Clinical Laboratory, Guangzhou Center for Disease Control and Prevention, No. 1 Qide Road, Baiyun District, Guangzhou, Guangdong, 510440, China.
Bo PengShenzhen Center for Disease Control and Prevention, No. 8 Longyuan Road, Nanshan District, Shenzhen, Guangdong Province, 518055, China.
Jingtao LiangFoshan Center for Disease Control and Prevention, No. 3 Yingyin Road, Chancheng District, Foshan, Guangdong Province, 528010, China.
Chenguang ShenBSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China. a124965468@smu.edu.cn.ORCID 0000-0001-8607-3750
Wei ZhaoBSL-3 Laboratory (Guangdong), Guangdong Provincial Key Laboratory of Tropical Disease Research, School of Public Health, Southern Medical University, No. 1023, South Shatai Road, Baiyun District, Guangzhou, Guangdong Province, 510515, China. zhaowei@smu.edu.cn.ORCID 0000-0003-1414-4438
Baisheng LiInstitute of Microbiology, Center for Disease Control and Prevention of Guangdong Province, No. 160 Qunxian Road, Dashi Street, Panyu District, Guangzhou, Guangdong Province, 511430, China. libsn@126.com.

Funding

National Natural Science Foundation of China (National Science Foundation of China) No. 82173191 [B.L.]National Natural Science Foundation of China (National Science Foundation of China) No. 82371846 [W.Z.]
6 · The paper itself

Abstract

The first local mpox outbreak in Guangdong Province, China occurred in June 2023. However, epidemiological data have failed to quickly identify the source and transmission of the outbreak. Here, phylogeny and molecular evolution of 10 monkeypox virus (MPXV) genome sequences from the Guangdong outbreak were characterized, revealing local silent transmissions that may have occurred in Guangdong whose mpox outbreaks suggested a molecular epidemiological correlation with Portugal and several regions of China during the same period. The lineage IIb C.1, which includes all 10 MPXV from Guangdong, shows consistent temporal continuity in both phylogenetic characteristics and unique molecular evolutionary mutation spectrum, reflected in the continuous increase of single nucleotide polymorphisms (SNPs) and shared mutations over time. Compared with the Japan MPXV, the Guangdong MPXV showed higher genomic nucleotide differences and separated 14 shared mutations from the B.1 lineage, comprising 6 non-synonymous mutations in genes linked to host regulation, virus infection, and virus life cycle. The unique mutation spectrum with temporal continuity in IIb C.1, related to apolipoprotein B mRNA-editing catalytic polypeptide-like 3, promotes rapid viral evolution and diversification. The findings contribute to understanding the ongoing mpox outbreak in China and offer insights for developing joint prevention and control strategies.

Indexed as

Monkeypox virusMpox, MonkeypoxDisease OutbreaksEvolution, MolecularHumansPhylogeny

Identifiers

PMID38086870
PMCPMC10716143

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.