Evidence map›Paper›PMID 38086419›Full record

ArticleNature2024

Cell-type-directed design of synthetic enhancers.

Ibrahim I Taskiran, Katina I Spanier, Hannah Dickmänken, Niklas Kempynck, Alexandra Pančíková, Eren Can Ekşi, Gert Hulselmans, Joy N Ismail, Koen Theunis, Roel Vandepoel and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
22.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 144 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Emergence Biases in Molecular Evolution.Genome biology and evolution · 2026
    Review
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  7. Review
  8. Article
  9. Article
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  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Designing DNA With Tunable Regulatory Activity Using Discrete Diffusion.bioRxiv : the preprint server for biology · 2026
    Article
  20. Article

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 3 countries.

Ibrahim I TaskiranLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.ORCID 0000-0002-5077-5264
Katina I SpanierLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.ORCID 0000-0002-1375-4157
Hannah DickmänkenLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.
Niklas KempynckLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.ORCID 0000-0002-0104-4844
Alexandra PančíkováLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.ORCID 0000-0002-0693-132X
Eren Can EkşiLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.ORCID 0000-0002-3122-9858
Gert HulselmansLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.
Joy N IsmailLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.
Koen TheunisLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.ORCID 0000-0002-0699-6676
Roel VandepoelLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.
Valerie ChristiaensLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.
David MauduitLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium.ORCID 0000-0002-2045-227X
Stein AertsLaboratory of Computational Biology, VIB Center for AI & Computational Biology (VIB.AI), Leuven, Belgium. stein.aerts@kuleuven.be.ORCID 0000-0002-8006-0315
VIB-KU Leuven Center for Cancer Biology · BE

Funding

ERC AdvancedERC ConsolidatorFoundation Against Cancer
6 · The paper itself

Abstract

Transcriptional enhancers act as docking stations for combinations of transcription factors and thereby regulate spatiotemporal activation of their target genes

Indexed as

CellsDeep LearningDrosophila melanogasterEnhancer Elements, GeneticSynthetic BiologyAnimalsAnimals, Genetically ModifiedBrainGene Expression RegulationHumansNeurogliaRepressor ProteinsTranscription FactorsRepressor ProteinsTranscription Factors

Identifiers

PMID38086419
PMCPMC10830415
OpenAlexW4389613138

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.