Evidence map›Paper›PMID 38085597›Full record

ArticleBiochemistry2024

Conserved Residues at the Mtr4 C-Terminus Coordinate Helicase Activity and Exosome Interactions.

Matthew K Yim, Catherine J Stuart, Markell I Pond, Ambro van Hoof, Sean J Johnson

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Matthew K YimDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322, United States.
Catherine J StuartDepartment of Microbiology and Molecular Genetics, University of Texas Health Science Center at Houston, Houston, Texas 77030, United States.
Markell I PondDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322, United States.
Ambro van HoofDepartment of Microbiology and Molecular Genetics, University of Texas Health Science Center at Houston, Houston, Texas 77030, United States.
Sean J JohnsonDepartment of Chemistry and Biochemistry, Utah State University, Logan, Utah 84322, United States.ORCID 0000-0001-7992-2494
Utah State University · USThe University of Texas Health Science Center at Houston · US

Funding

RNAse functions in post-transcriptional gene regulationR35GM141710 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI VAN HOOF, AMBRO · 2021 to 2025
$2.4M
Structural and Functional Studies of Mtr4 and Mtr4-mediated ComplexesR01GM117311 · NIGMS · UTAH STATE UNIVERSITY · PI JOHNSON, SEAN J · 2015 to 2019
$1.5M
Structural and Functional Studies of Mtr4 and the TRAMP RNA Surveillance ComplexR15GM148949 · NIGMS · UTAH STATE UNIVERSITY · PI JOHNSON, SEAN J · 2022 to 2023
$512k
NIGMS NIH HHS R01 GM117311NIGMS NIH HHS R15 GM148949NIGMS NIH HHS R35 GM141710
6 · The paper itself

Abstract

Mtr4 is an essential RNA helicase involved in nuclear RNA processing and degradation and is a member of the Ski2-like helicase family. Ski2-like helicases share a common core architecture that includes two RecA-like domains, a winged helix, and a helical bundle (HB) domain. In Mtr4, a short C-terminal tail immediately follows the HB domain and is positioned at the interface of the RecA-like domains. The tail ends with a SLYΦ sequence motif that is highly conserved in a subset of Ski2-like helicases. Here, we show that this sequence is critical for Mtr4 function. Mutations in the C-terminus result in decreased RNA unwinding activity. Mtr4 is a key activator of the RNA exosome complex, and mutations in the SLYΦ motif produce a slow growth phenotype when combined with a partial exosome defect in

Indexed as

ExosomesSaccharomyces cerevisiae ProteinsDEAD-box RNA HelicasesDNA HelicasesExosome Multienzyme Ribonuclease ComplexRNA HelicasesSaccharomyces cerevisiaeDEAD-box RNA HelicasesDNA HelicasesExosome Multienzyme Ribonuclease ComplexRNA HelicasesSaccharomyces cerevisiae Proteins

Identifiers

PMID38085597
PMCPMC10984559
OpenAlexW4389613170

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.