Evidence map›Paper›PMID 38085361›Full record

ArticleMolecular biology reports2023

Analysis of IL-1β, TGF-β, IL-5, ACE, PTPN22 gene polymorphisms, and gene expression levels in Turkish children with IgA vasculitis.

Raziye Burcu Taşkın, İlyas Aydın, Gülçin Aytaç, Süleyman Imamoglu, Secil Conkar Tunçay, İpek Kaplan Bulut, Neslihan Edeer Karaca, Güzide Aksu, Afig Berdeli, Necil Kütükçüler

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In one paragraph

Article in Molecular biology reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it, 1 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Raziye Burcu TaşkınFaculty of Medicine, Department of Pediatric Rheumatology, Ege University, Izmir, Turkey. rzyburcuguven@hotmail.com.
İlyas AydınFaculty of Medicine, Department of Pediatric Rheumatology, Ege University, Izmir, Turkey.
Gülçin AytaçFaculty of Medicine, Department of Pediatric Rheumatology, Ege University, Izmir, Turkey.
Süleyman ImamogluFaculty of Medicine, Department of Pediatric Rheumatology, Ege University, Izmir, Turkey.
Secil Conkar TunçayFaculty of Medicine, Department of Pediatric Nephrology, Ege University, Izmir, Turkey.
İpek Kaplan BulutFaculty of Medicine, Department of Pediatric Nephrology, Ege University, Izmir, Turkey.
Neslihan Edeer KaracaFaculty of Medicine, Department of Pediatrics, Division of Pediatric Immunology, Ege University, Kazimdirik Neighborhood, University Street Number: 9, 35100, Bornova, Izmir, Turkey.
Güzide AksuFaculty of Medicine, Department of Pediatric Rheumatology, Ege University, Izmir, Turkey.
Afig BerdeliFaculty of Medicine, Department of Pediatric Rheumatology, Ege University, Izmir, Turkey.
Necil KütükçülerFaculty of Medicine, Department of Pediatric Rheumatology, Ege University, Izmir, Turkey.
Ege University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveImmunoglobulin-A vasculitis (IgAV) is an inflammatory disease that affects small blood vessels. This study was performed to identify an association between protein tyrosine phosphatase non-receptor type 22 (PTPN22) + 788G > A (rs33996649), transforming growth factor-beta (TGF-β) -509C > T (rs18004069), interleukin 1-beta (IL-1β) -511C > T (rs16944), interleukin 5 (IL-5) -746C/T (rs2069812), and angiotensin-converting enzyme (ACE) I/D (rs4646994) gene polymorphisms, susceptibility to IgAV, as well as the mRNA levels of IL-1β, IL-1β, and TGF-β.

methodA total of 53 patients with IgAV and 50 healthy controls were enrolled. PTPN22, TGF-β, IL-1β, ACE gene polymorphisms, ACE gene I/D polymorphisms, and mRNA expression levels were analyzed using the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method, allele-specific PCR, and real-time PCR with TaqMan kits, respectively.

resultsPTPN22, TGF-β, IL-1β, IL-5, and ACE variants showed no genotype or allele differences between patients with IgAV and controls. Increased levels of IL-1β and TGF-β mRNA expressions were observed in patients with IgAV (p < 0.001). Patients with the IL-1β AG genotype showed significantly increased amounts of arthritis than patients with non-AG (p = 0.004). Age at disease onset was found to be significantly different in patients with IgAV according to the presence of TGF-β TT genotype (p = 0.047).

conclusionPolymorphisms in PTPN22, TGF-β, IL-5, IL-1β, and ACE genes are unlikely to confer susceptibility to IgAV. However, the presence of the AG genotype of IL-1β is associated with susceptibility to IgAV-related arthritis. This is the first study to report a significant increase in serum mRNA levels of IL-1β and TGF-β in IgAV patients, supporting a susceptibility to IgAV in childhood.

Indexed as

ArthritisIgA VasculitisCase-Control StudiesChildGene ExpressionGene FrequencyGenetic Predisposition to DiseaseGenotypeHumansInterleukin-5Peptidyl-Dipeptidase APolymorphism, GeneticPolymorphism, Single NucleotideProtein Tyrosine Phosphatase, Non-Receptor Type 22Real-Time Polymerase Chain ReactionRNA, MessengerInterleukin-5Peptidyl-Dipeptidase AProtein Tyrosine Phosphatase, Non-Receptor Type 22PTPN22 protein, humanRNA, MessengerTransforming Growth Factor betaACE gene polymorphismIgA vasculitisProinflammatory cytokine gene polymorphisms

Identifiers

PMID38085361
OpenAlexW4389613774

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.