Evidence map›Paper›PMID 38085267›Full record

ArticleThe Journal of experimental medicine2024

Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice.

Adriana Vasquez Ayala, Chia-Yun Hsu, Renee E Oles, Kazuhiko Matsuo, Luke R Loomis, Ekaterina Buzun, Marvic Carrillo Terrazas, Romana R Gerner, Hsueh-Han Lu, Sohee Kim and 7 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Comparative genomic analysis ofMicrobiology spectrum · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Microbiota-dependent IFN-L controls uterine and placental immunity.bioRxiv : the preprint server for biology · 2026
    Article
  12. Article
  13. Article
  14. Current research in microbial sciences · 2026
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. IL-27 promotes Treg cell expression of CD122 and fitness at homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 4 countries.

Adriana Vasquez AyalaDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-6917-3581
Chia-Yun HsuDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-5283-1020
Renee E OlesDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-5945-0215
Kazuhiko MatsuoDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-5782-5300
Luke R LoomisDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0009-0003-1131-7185
Ekaterina BuzunDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-1223-1290
Marvic Carrillo TerrazasDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-8830-5161
Romana R GernerTUM School of Life Sciences Weihenstephan, ZIEL Institute for Food & Health , Freising-Weihenstephan, Germany.ORCID 0000-0003-2377-6509
Hsueh-Han LuDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0002-0832-9607
Sohee KimDepartment of Microbiology and Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.ORCID 0009-0003-0989-5584
Ziyue ZhangSchool of Biological Sciences, University of California, San Diego , La Jolla, CA, USA.ORCID 0009-0002-8996-6049
Jong Hwee ParkDivision of Biology, California Institute of Technology, Pasadena, CA, USA.ORCID 0009-0002-6522-7049
Paul RivaudDivision of Biology, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0001-8637-3331
Matt ThomsonDivision of Biology, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0003-1021-1234
Li-Fan LuSchool of Biological Sciences, University of California, San Diego , La Jolla, CA, USA.ORCID 0000-0002-9727-0036
Booki MinDepartment of Microbiology and Immunology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.ORCID 0000-0002-2151-9413
Hiutung ChuDepartment of Pathology, University of California, San Diego, La Jolla, CA, USA.ORCID 0000-0001-7489-0446
University of California San Diego · USCalifornia Institute of Technology · USNorthwestern University · USCanadian Institute for Advanced Research · CAWeihenstephan-Triesdorf University of Applied Sciences · DE

Funding

San Diego Digestive Diseases Research CenterP30DK120515 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Bernd G. Schnabl · 2019 to 2026
$10.8M
Training Grant in GastroenterologyT32DK007202 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 1985 to 2022
$7.7M
Role of microRNAs in regulatory T cell-mediated immunological tolerance and T celR01AI108651 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LU, LI-FAN · 2014 to 2024
$4.0M
Rheumatic Diseases Research Training GrantT32AR064194 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GARY S FIRESTEIN, Monica Guma · 2013 to 2026
$3.8M
The role of IL-27/Lag3 axis in regulating Foxp3+ regulatory T cell functionR01AI125247 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Booki Min · 2017 to 2026
$3.4M
Bacterial adaptions in host-microbe interactions.R01AI167860 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Hiutung Chu · 2022 to 2026
$2.8M
The Microbiome Mediates Protections from Colitis Through Pathways Linked to IBDR00DK110534 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHU, HIUTUNG · 2018 to 2020
$744k
Functional dissection of the Klrg1+ regulatory T cell subset in health and diseasesR21AI163813 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LU, LI-FAN · 2021 to 2022
$435k
Howard Hughes Medical Institute GT15123NIAID NIH HHS R01 AI108651NIAID NIH HHS R01 AI125247NIAID NIH HHS R01 AI167860NIAID NIH HHS R21 AI163813NIAMS NIH HHS T32 AR064194NIDDK NIH HHS P30 DK120515NIDDK NIH HHS R00 DK110534NIDDK NIH HHS T32 DK007202
6 · The paper itself

Abstract

Type I interferons (IFNs) exert a broad range of biological effects important in coordinating immune responses, which have classically been studied in the context of pathogen clearance. Yet, whether immunomodulatory bacteria operate through IFN pathways to support intestinal immune tolerance remains elusive. Here, we reveal that the commensal bacterium, Bacteroides fragilis, utilizes canonical antiviral pathways to modulate intestinal dendritic cells (DCs) and regulatory T cell (Treg) responses. Specifically, IFN signaling is required for commensal-induced tolerance as IFNAR1-deficient DCs display blunted IL-10 and IL-27 production in response to B. fragilis. We further establish that IFN-driven IL-27 in DCs is critical in shaping the ensuing Foxp3+ Treg via IL-27Rα signaling. Consistent with these findings, single-cell RNA sequencing of gut Tregs demonstrated that colonization with B. fragilis promotes a distinct IFN gene signature in Foxp3+ Tregs during intestinal inflammation. Altogether, our findings demonstrate a critical role of commensal-mediated immune tolerance via tonic type I IFN signaling.

Indexed as

Interferon Type IInterleukin-27AnimalsBacteriaDendritic CellsForkhead Transcription FactorsImmune ToleranceMiceT-Lymphocytes, RegulatoryForkhead Transcription FactorsInterferon Type IInterleukin-27

Identifiers

PMID38085267
PMCPMC10716256
OpenAlexW4389615151

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.