Evidence map›Paper›PMID 38085063›Full record

ArticleThe Plant cell2024

A developmentally controlled cellular decompartmentalization process executes programmed cell death in the Arabidopsis root cap.

Jie Wang, Norbert Bollier, Rafael Andrade Buono, Hannah Vahldick, Zongcheng Lin, Qiangnan Feng, Roman Hudecek, Qihang Jiang, Evelien Mylle, Daniel Van Damme and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Subcellular calcium dynamics and organelle perturbations in resistosome-mediated cell death.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Review
  8. Article
  9. Article
  10. Hygrometrically controlled programmed cell death drives anther opening and pollen release.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Jie WangDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-8076-0995
Norbert BollierDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0003-0537-4151
Rafael Andrade BuonoDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-6675-3836
Hannah VahldickDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-1919-6192
Zongcheng LinDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-4556-0226
Qiangnan FengDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-8450-6134
Roman HudecekDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-2271-7104
Qihang JiangDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0003-4913-1979
Evelien MylleDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-3690-4365
Daniel Van DammeDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0002-9385-4851
Moritz K NowackDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Ghent 9052, Belgium.ORCID 0000-0001-8918-7577
Ghent University · BE

Funding

European Research Council 639234European Research Council 864952
6 · The paper itself

Abstract

Programmed cell death (PCD) is a fundamental cellular process crucial to development, homeostasis, and immunity in multicellular eukaryotes. In contrast to our knowledge on the regulation of diverse animal cell death subroutines, information on execution of PCD in plants remains fragmentary. Here, we make use of the accessibility of the Arabidopsis (Arabidopsis thaliana) root cap to visualize the execution process of developmentally controlled PCD. We identify a succession of selective decompartmentalization events and ion fluxes as part of the terminal differentiation program that is orchestrated by the NO APICAL MERISTEM, ARABIDOPSIS THALIANA ACTIVATING FACTOR, CUP-SHAPED COTYLEDON (NAC) transcription factor SOMBRERO. Surprisingly, the breakdown of the large central vacuole is a relatively late and variable event, preceded by an increase of intracellular calcium levels and acidification, release of mitochondrial matrix proteins, leakage of nuclear and endoplasmic reticulum lumina, and release of fluorescent membrane reporters into the cytosol. In analogy to animal apoptosis, the plasma membrane remains impermeable for proteins during and after PCD execution. Elevated intracellular calcium levels and acidification are sufficient to trigger cell death execution specifically in terminally differentiated root cap cells, suggesting that these ion fluxes act as PCD-triggering signals. This detailed information on the cellular processes occurring during developmental PCD in plants is a pivotal prerequisite for future research into the molecular mechanisms of cell death execution.

Indexed as

ArabidopsisArabidopsis ProteinsApoptosisCalciumCell DeathArabidopsis ProteinsCalcium

Identifiers

PMID38085063
PMCPMC7615778
OpenAlexW4389627533

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.