Evidence map›Paper›PMID 38082557›Full record

ArticleCPT: pharmacometrics & systems pharmacology2024

gPKPDviz: A flexible R shiny tool for pharmacokinetic/pharmacodynamic simulations using mrgsolve.

Tong Lu, Victor Poon, Logan Brooks, Erick Velasquez, Eric Anderson, Kyle Baron, Jin Y Jin, Matts Kågedal

Abstract read
In one paragraph

Article in CPT: pharmacometrics & systems pharmacology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Tong LuDepartment of Clinical Pharmacology, Genentech, Inc., South San Francisco, California, USA.ORCID 0000-0001-5899-6857
Victor PoonDepartment of Clinical Pharmacology, Genentech, Inc., South San Francisco, California, USA.ORCID 0000-0002-4215-2198
Logan BrooksDepartment of Clinical Pharmacology, Genentech, Inc., South San Francisco, California, USA.ORCID 0000-0001-9215-408X
Erick VelasquezDepartment of Clinical Pharmacology, Genentech, Inc., South San Francisco, California, USA.ORCID 0000-0002-0874-4317
Eric AndersonMetrum Research Group, Tariffville, Connecticut, USA.ORCID 0009-0003-8191-2879
Kyle BaronMetrum Research Group, Tariffville, Connecticut, USA.ORCID 0000-0001-7252-5656
Jin Y JinDepartment of Clinical Pharmacology, Genentech, Inc., South San Francisco, California, USA.ORCID 0000-0002-3627-0323
Matts KågedalDepartment of Clinical Pharmacology, Genentech, Inc., South San Francisco, California, USA.ORCID 0000-0002-1261-0354

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GPKPDviz is a Shiny application (app) dedicated to real-time simulation, visualization, and assessment of the pharmacokinetic/pharmacodynamic (PK/PD) models. Within the app, gPKPDviz is capable of generating virtual populations and complex dosing and sampling scenarios, which, together with the streamlined workflow, is designed to efficiently assess the impact of covariates and dosing regimens on PK/PD end points. The actual population data from clinical trials can be loaded into the app for simulation if desired. The app-generated dosing regimens include single or multiple dosing, and more complex regimens, such as loading doses or intermittent dosing. When necessary, the dosing regimens can be defined externally and loaded to the app for simulation. Using mrgsolve as the simulation engine, gPKPDviz is typically used for population simulation, however, with a slight modification of the mrgsolve model, gPKPDviz is capable of performing individual simulations with individual post hoc parameters, individual dosing logs, and individual sampling timepoints through an external dataset. A built-in text editor has a debugging feature for the mrgsolve model, providing the same error messages as model compilation in R. GPKPDviz has had stringent validation by comparing simulation results between the app and using mrgsolve in R. GPKPDviz is a member of the suite of Modeling and Simulation Shiny apps developed at Genentech to facilitate the typical modeling work in Clinical Pharmacology. For broader access to the Pharmacometric community, gPKPDviz has been published as an open-source application in GitHub under the terms of GNU General Public License.

Indexed as

Models, BiologicalComputer Simulation

Identifiers

PMID38082557
PMCPMC10941578

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.