Evidence map›Paper›PMID 38081998›Full record

ArticleNPJ precision oncology2023

A deep learning model, NAFNet, predicts adverse pathology and recurrence in prostate cancer using MRIs.

Wei-Jie Gu, Zheng Liu, Yun-Jie Yang, Xuan-Zhi Zhang, Liang-Yu Chen, Fang-Ning Wan, Xiao-Hang Liu, Zhang-Zhe Chen, Yun-Yi Kong, Bo Dai

Abstract read
In one paragraph

Article in NPJ precision oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Wei-Jie Gu *Department of Urology, Fudan University Shanghai Cancer Center, Shanghai, China.
Zheng Liu *Department of Urology, Fudan University Shanghai Cancer Center, Shanghai, China.
Yun-Jie Yang *Department of Urology, Fudan University Shanghai Cancer Center, Shanghai, China.
Xuan-Zhi ZhangDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China.
Liang-Yu ChenDepartment of Foundation Model, MEGVII Technology, Beijing, China.
Fang-Ning WanDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China.
Xiao-Hang LiuDepartment of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Zhang-Zhe ChenDepartment of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Yun-Yi KongDepartment of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Bo DaiDepartment of Urology, Fudan University Shanghai Cancer Center, Shanghai, China. bodai1978@126.com.ORCID http://orcid.org/0000-0003-1383-3864

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82373355, 82172703Science and Technology Commission of Shanghai Municipality (Shanghai Municipal Science and Technology Commission) 20Y11905000Shanghai Municipal Health Bureau (Shanghai Municipal Public Health Bureau) 2022XD01
6 · The paper itself

Abstract

We aimed to apply a potent deep learning network, NAFNet, to predict adverse pathology events and biochemical recurrence-free survival (bRFS) based on pre-treatment MRI imaging. 514 prostate cancer patients from six tertiary hospitals throughout China from 2017 and 2021 were included. A total of 367 patients from Fudan University Shanghai Cancer Center with whole-mount histopathology of radical prostatectomy specimens were assigned to the internal set, and cancer lesions were delineated with whole-mount pathology as the reference. The external test set included 147 patients with BCR data from five other institutes. The prediction model (NAFNet-classifier) and integrated nomogram (DL-nomogram) were constructed based on NAFNet. We then compared DL-nomogram with radiology score (PI-RADS), and clinical score (Cancer of the Prostate Risk Assessment score (CAPRA)). After training and validation in the internal set, ROC curves in the external test set showed that NAFNet-classifier alone outperformed ResNet50 in predicting adverse pathology. The DL-nomogram, including the NAFNet-classifier, clinical T stage and biopsy results, showed the highest AUC (0.915, 95% CI: 0.871-0.959) and accuracy (0.850) compared with the PI-RADS and CAPRA scores. Additionally, the DL-nomogram outperformed the CAPRA score with a higher C-index (0.732, P < 0.001) in predicting bRFS. Based on this newly-developed deep learning network, NAFNet, our DL-nomogram could accurately predict adverse pathology and poor prognosis, providing a potential AI tools in medical imaging risk stratification.

Identifiers

PMID38081998
PMCPMC10713594

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.