Evidence map›Paper›PMID 38081811›Full record

ArticleNature communications2023

RIF1 regulates early replication timing in murine B cells.

Daniel Malzl, Mihaela Peycheva, Ali Rahjouei, Stefano Gnan, Kyle N Klein, Mariia Nazarova, Ursula E Schoeberl, David M Gilbert, Sara C B Buonomo, Michela Di Virgilio and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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  7. Dynamics of Replication-Associated Protein Levels through the Cell Cycle.International journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Daniel Malzl *Research Institute of Molecular Pathology (IMP), Vienna Biocenter, 1030, Vienna, Austria.
Mihaela Peycheva *Research Institute of Molecular Pathology (IMP), Vienna Biocenter, 1030, Vienna, Austria.ORCID 0000-0001-9268-0637
Ali RahjoueiMax-Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC), 13125, Berlin, Germany.
Stefano GnanSchool of Biological Sciences, Institute of Cell Biology, University of Edinburgh, Edinburgh, EH9 3FF, UK.ORCID 0000-0003-3314-4302
Kyle N KleinSan Diego Biomedical Research Institute, San Diego, CA, 92121, USA.
Mariia NazarovaResearch Institute of Molecular Pathology (IMP), Vienna Biocenter, 1030, Vienna, Austria.ORCID 0000-0001-5293-4161
Ursula E SchoeberlResearch Institute of Molecular Pathology (IMP), Vienna Biocenter, 1030, Vienna, Austria.ORCID 0000-0002-6105-5385
David M GilbertSan Diego Biomedical Research Institute, San Diego, CA, 92121, USA.ORCID 0000-0001-8087-9737
Sara C B BuonomoSchool of Biological Sciences, Institute of Cell Biology, University of Edinburgh, Edinburgh, EH9 3FF, UK.ORCID 0000-0002-0177-2884
Michela Di VirgilioMax-Delbruck Center for Molecular Medicine in the Helmholtz Association (MDC), 13125, Berlin, Germany.ORCID 0000-0001-5189-0793
Tobias NeumannResearch Institute of Molecular Pathology (IMP), Vienna Biocenter, 1030, Vienna, Austria. tobias.neumann@imp.ac.at.ORCID 0000-0003-3908-4224
Rushad PavriResearch Institute of Molecular Pathology (IMP), Vienna Biocenter, 1030, Vienna, Austria. rushad.pavri@imp.ac.at.ORCID 0000-0002-6191-6333
Research Institute of Molecular Pathology · ATMax Delbrück Center · DESan Diego Biomedical Research Institute · USUniversity of Edinburgh · GB

Funding

Genome Plasticity during ES Cell Differentiation to Neural LineagesR01GM083337 · NIGMS · SAN DIEGO BIOMEDICAL RESEARCH INSTITUTE · PI David M Gilbert · 2007 to 2026
$6.1M
Austrian Science Fund FWF T 795NIGMS NIH HHS R01 GM083337Österreichische Forschungsförderungsgesellschaft (Austrian Research Promotion Agency) FFG-834223
6 · The paper itself

Abstract

The mammalian DNA replication timing (RT) program is crucial for the proper functioning and integrity of the genome. The best-known mechanism for controlling RT is the suppression of late origins of replication in heterochromatin by RIF1. Here, we report that in antigen-activated, hypermutating murine B lymphocytes, RIF1 binds predominantly to early-replicating active chromatin and promotes early replication, but plays a minor role in regulating replication origin activity, gene expression and genome organization in B cells. Furthermore, we find that RIF1 functions in a complementary and non-epistatic manner with minichromosome maintenance (MCM) proteins to establish early RT signatures genome-wide and, specifically, to ensure the early replication of highly transcribed genes. These findings reveal additional layers of regulation within the B cell RT program, driven by the coordinated activity of RIF1 and MCM proteins.

Indexed as

DNA ReplicationDNA Replication TimingAnimalsChromatinHeterochromatinMammalsMiceMinichromosome Maintenance ProteinsReplication OriginTelomere-Binding ProteinsChromatinHeterochromatinMinichromosome Maintenance ProteinsRif1 protein, mouseTelomere-Binding Proteins

Identifiers

PMID38081811
PMCPMC10713614
OpenAlexW4389564498

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.