Evidence map›Paper›PMID 38081810›Full record

ArticleNature communications2023

Immunoproximity biotinylation reveals the axon initial segment proteome.

Wei Zhang, Yu Fu, Luxin Peng, Yuki Ogawa, Xiaoyun Ding, Anne Rasband, Xinyue Zhou, Maya Shelly, Matthew N Rasband, Peng Zou

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Wei ZhangCollege of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Peking University, Beijing, 100871, China.
Yu FuCollege of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Peking University, Beijing, 100871, China.
Luxin PengCollege of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Peking University, Beijing, 100871, China.ORCID 0000-0003-3843-4923
Yuki OgawaDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0003-2126-9087
Xiaoyun DingDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-9786-6630
Anne RasbandDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Xinyue ZhouAcademy for Advanced Interdisciplinary Studies, PKU-Tsinghua Center for Life Science, Peking University, Beijing, 100871, China.
Maya ShellyDepartment of Neurobiology and Behavior, Stony Brook University, New York, NY, USA.
Matthew N RasbandDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA. rasband@bcm.edu.ORCID 0000-0001-8184-2477
Peng ZouCollege of Chemistry and Molecular Engineering, Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, Peking University, Beijing, 100871, China. zoupeng@pku.edu.cn.ORCID 0000-0002-9798-5242
Baylor College of Medicine · USPeking University · CNStony Brook University · US

Funding

The Molecular Architecture of Axons in Health and DiseaseR35NS122073 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI MATTHEW N RASBAND · 2021 to 2026
$5.6M
Molecular Mechanisms of Dendrite Formation During Embryonic Neuronal DevelopmentR01NS084111 · NINDS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SHELLY, MAYA · 2014 to 2018
$1.7M
Molecular Mechanisms that Initiate Apical Dendrite Development During Embryonic Neuronal DevelopmentR01NS119512 · NINDS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SHELLY, MAYA · 2021 to 2024
$1.6M
Controlling Spatially Restricted Intracellular Protein-Activity During Embryonic Neuronal Development Using Biomagnetic NanotechnologiesR21NS114914 · NINDS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SHELLY, MAYA · 2021 to 2022
$432k
NINDS NIH HHS R01 NS084111NINDS NIH HHS R01 NS119512NINDS NIH HHS R21 NS114914NINDS NIH HHS R35 NS122073
6 · The paper itself

Abstract

The axon initial segment (AIS) is a specialized neuronal compartment required for action potential generation and neuronal polarity. However, understanding the mechanisms regulating AIS structure and function has been hindered by an incomplete knowledge of its molecular composition. Here, using immuno-proximity biotinylation we further define the AIS proteome and its dynamic changes during neuronal maturation. Among the many AIS proteins identified, we show that SCRIB is highly enriched in the AIS both in vitro and in vivo, and exhibits a periodic architecture like the axonal spectrin-based cytoskeleton. We find that ankyrinG interacts with and recruits SCRIB to the AIS. However, loss of SCRIB has no effect on ankyrinG. This powerful and flexible approach further defines the AIS proteome and provides a rich resource to elucidate the mechanisms regulating AIS structure and function.

Indexed as

Axon Initial SegmentAxonsBiotinylationNeuronsProteomeProteome

Identifiers

PMID38081810
PMCPMC10713531
OpenAlexW4389556646

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.