Evidence map›Paper›PMID 38077046›Full record

ArticlebioRxiv : the preprint server for biology2023

BCG vaccination impacts the epigenetic landscape of progenitor cells in human bone marrow.

Sarah J Sun, Raúl Aguirre-Gamboa, L Charlotte J de Bree, Joaquin Sanz, Anne Dumaine, Leo A B Joosten, Maziar Divangahi, Mihai G Netea, Luis B Barreiro

Registry-linked trialOpen access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07527247 (Using AS01 Adjuvant to Improve Immune Response in Older Adults Through Trained Immunity), which is not on this map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07527247 phase2recruitingnot on this mapstarted 2025, after this paper: background citation

Using AS01 Adjuvant to Improve Immune Response in Older Adults Through Trained Immunity

TypeinterventionalSponsorSingapore General HospitalRan2025 to 2029Enrolled40ConditionsImmune System Responses and Trained Immunity After AS01 Administration, Healthy AdultArmsAS01 adjuvant (0.5 mL intramuscular), YF17D (Stamaril, Sanofi-Pasteur), Placebo (NaCl 09%, 0.5mL)
3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 6 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 6 countries.

Sarah J SunCommittee on Immunology, University of Chicago, Chicago, IL, USA.ORCID 0000-0001-5604-7324
Raúl Aguirre-GamboaSection of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, IL, USA.
L Charlotte J de BreeDepartment of Internal Medicine and Radbound Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands.
Joaquin SanzInstitute for Biocomputation and Physics of Complex Systems (BIFI) and Dept. of Theoretical Physics, University of Zaragoza, Zaragoza, Spain.ORCID 0000-0002-2980-9685
Anne DumaineSection of Genetic Medicine, Department of Medicine, University of Chicago, Chicago, IL, USA.
Leo A B JoostenDepartment of Internal Medicine and Radbound Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands.ORCID 0000-0001-6166-9830
Maziar DivangahiDepartment of Internal Medicine and Radbound Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands.
Mihai G NeteaDepartment of Internal Medicine and Radbound Center for Infectious Diseases, Radboud University Medical Center, Nijmegen, the Netherlands.
Luis B BarreiroCommittee on Immunology, University of Chicago, Chicago, IL, USA.
University of Chicago · USRadboud University Nijmegen · NLUniversidad de Zaragoza · ESUniversity of Bonn · DE

Funding

ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1990 to 2025
$29.8M
Medical Scientist National Research Service AwardT32GM150375 · NIGMS · UNIVERSITY OF CHICAGO · PI Raghavendra G Mirmira · 2023 to 2026
$5.5M
Characterizing the impact of Yersinia Pestis to the phenotypic evolution of the human immune systemR01GM134376 · NIGMS · UNIVERSITY OF CHICAGO · PI BARREIRO, LUIS BRUNO · 2019 to 2022
$2.2M
Probing short and long term consequences of Small and Large Bowel Microbiota Transplants on Host Physiology: Implications for the development of future live biotherapeuticsR01DK138072 · NIDDK · UNIVERSITY OF CHICAGO · PI EUGENE B CHANG, Kristina Brooke Martinez-Guryn · 2024 to 2026
$2.1M
iPSC-derived macrophages as a model to study the genetic basis of inter-individual variation in immune responses to pathogensR01AI182148 · NIAID · UNIVERSITY OF CHICAGO · PI Luis Bruno Barreiro · 2025 to 2026
$1.6M
NIAID NIH HHS R01 AI182148NIDDK NIH HHS P30 DK042086NIDDK NIH HHS R01 DK138072NIGMS NIH HHS R01 GM134376NIGMS NIH HHS T32 GM150375
6 · The paper itself

Abstract

While the Bacille-Calmette-Guérin (BCG) vaccine is used to prevent tuberculosis, it also offers protection against a diverse range of non-mycobacterial infections. However, the underlying protective mechanisms in humans are not yet fully understood. Here, we surveyed at single-cell resolution the gene expression and chromatin landscape of human bone marrow, aspirated before and 90 days after BCG vaccination or placebo administration. We show that BCG vaccination significantly alters both the gene expression and epigenetic profiles of human hematopoietic stem and progenitor cells (HSPCs). Changes in gene expression occur primarily on the most uncommitted stem cells and are reflective of a persistent myeloid bias. In contrast, BCG-induced changes in chromatin accessibility are most prevalent within differentiated progenitor cells at sites influenced by Kruppel-like factor (KLF)/SP and EGR transcription factors (TFs). These TFs are also activated in the most uncommitted stem cells, indicating that activated TFs, which drive persistent changes in HSC gene expression, likely also drive chromatin dynamics appearing within downstream progenitor cells. This perspective contests the prevailing notion that epigenetic modifications linked to innate immune memory transfer directly from stem cells to their differentiated derivatives. Finally, we show that alterations in gene expression and chromatin accessibility in HSPCs due to BCG vaccination were highly correlated (r>0.8) with the IL-1β secretion capacity of paired PBMCs upon secondary immune challenge. Overall, our findings shed light on BCG vaccination's profound and lasting effects on HSPCs and its influence on innate immune responses.

Identifiers

PMID38077046
PMCPMC10705418
OpenAlexW4389108461

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.