Evidence map›Paper›PMID 38076863›Full record

ArticlebioRxiv : the preprint server for biology2023

A fluorogenic complementation tool kit for interrogating lipid droplet-organelle interaction.

Xiao Li, Rico Gamuyao, Ming-Lun Wu, Woo Jung Cho, Nathan B Kurtz, Sharon V King, R A Petersen, Daniel R Stabley, Caleb Lindow, Leslie Climer and 7 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Xiao LiDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Rico GamuyaoDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Ming-Lun WuDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Woo Jung ChoCell and Tissue Imaging Center, St. Jude Children's Research Hospital, Memphis, TN, United States.
Nathan B KurtzCell and Tissue Imaging Center, St. Jude Children's Research Hospital, Memphis, TN, United States.
Sharon V KingDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, United States.
R A PetersenDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Daniel R StableyDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Caleb LindowDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Leslie ClimerDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Abbas ShirinifardDepartment of Developmental Neurobiology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Francesca FerraraVector Production and Development Laboratory, St. Jude Children's Research Hospital, Memphis, TN, United States.
Robert E ThromVector Production and Development Laboratory, St. Jude Children's Research Hospital, Memphis, TN, United States.
Camenzind G RobinsonCell and Tissue Imaging Center, St. Jude Children's Research Hospital, Memphis, TN, United States.
Alex CariseyDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, United States.
Alison G TeboJanelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA, United States.
Chi-Lun ChangDepartment of Cell and Molecular Biology, St. Jude Children's Research Hospital, Memphis, TN, United States.ORCID 0000-0003-0017-2243
St. Jude Children's Research Hospital · USHoward Hughes Medical Institute · US

Funding

Understanding Metabolism in Space and Time – Mechanistic Analysis of the Dynamic Spatial Organization of MetabolismDP2GM150192 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHANG, CHI-LUN · 2022 to 2025
$2.7M
NIGMS NIH HHS DP2 GM150192
6 · The paper itself

Abstract

Contact sites between lipid droplets and other organelles are essential for cellular lipid and energy homeostasis. Detection of these contact sites at nanometer scale over time in living cells is challenging. Here, we developed a tool kit for detecting contact sites based on Fluorogen-Activated Bimolecular complementation at CONtact sites, FABCON, using a reversible, low affinity split fluorescent protein, splitFAST. FABCON labels contact sites with minimal perturbation to organelle interaction. Via FABCON, we quantitatively demonstrated that endoplasmic reticulum (ER)- and mitochondria (mito)-lipid droplet contact sites are dynamic foci in distinct metabolic conditions, such as during lipid droplet biogenesis and consumption. An automated analysis pipeline further classified individual contact sites into distinct subgroups based on size, likely reflecting differential regulation and function. Moreover, FABCON is generalizable to visualize a repertoire of organelle contact sites including ER-mito. Altogether, FABCON reveals insights into the dynamic regulation of lipid droplet-organelle contact sites and generates new hypotheses for further mechanistical interrogation during metabolic switch.

Identifiers

PMID38076863
PMCPMC10705429
OpenAlexW4389203827

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.