Evidence map›Paper›PMID 38076838›Full record

ArticlebioRxiv : the preprint server for biology2023

DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard.

Adam Wright, Mark D Wilkinson, Chris Mungall, Scott Cain, Stephen Richards, Paul Sternberg, Ellen Provin, Jonathan L Jacobs, Scott Geib, Daniela Raciti and 3 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Adam WrightAdaptive Oncology Program, Ontario Institute for Cancer Research, 661 University Avenue Suite 500, Toronto, ON M5G 0A3, Canada.ORCID 0000-0002-5719-4024
Mark D WilkinsonDepartamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas,Centro de Biotecnología y Genómica de Plantas (CBGP, UPM-INIA/CSIC), Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA/CSIC), Pozuelo de Alarcón, Madrid, ES, Spain.ORCID 0000-0001-6960-357X
Chris MungallBiosystems Data Science, Lawrence Berkeley National Laboratory, Building: 977, 1 Cyclotron Rd, Berkeley, CA 94720 USA.ORCID 0000-0002-6601-2165
Scott CainAdaptive Oncology Program, Ontario Institute for Cancer Research, 661 University Avenue Suite 500, Toronto, ON M5G 0A3, Canada.ORCID 0000-0003-0459-9607
Stephen RichardsHuman Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, MS: BCM226, Houston, TX 77030, USA.ORCID 0000-0001-8959-5466
Paul SternbergDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.ORCID 0000-0002-7699-0173
Ellen ProvinDepartment of Horticultural Studies, Texas A&M University, HFSB 204, TAMU 2133, College Station, TX 77848, USA.ORCID 0000-0002-7665-2385
Jonathan L JacobsAmerican Type Culture Collection, 10801 University Blvd, Manassas, VA 20110, USA.ORCID 0000-0001-5608-4256
Scott GeibTropical Pest Genetics and Molecular Biology Research Unit, Daniel K. Inouye U.S. Pacific Basin Agricultural Research Center, United States Department of Agriculture, Agricultural Research Service, 64 Nowelo St, Hilo HI 96720 USA.ORCID 0000-0002-9511-5139
Daniela RacitiDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.ORCID 0000-0002-4945-5837
Karen YookDivision of Biology and Biological Engineering 140-18, California Institute of Technology, Pasadena, CA 91125, USA.ORCID 0000-0002-4457-6787
Lincoln SteinAdaptive Oncology Program, Ontario Institute for Cancer Research, 661 University Avenue Suite 500, Toronto, ON M5G 0A3, Canada.ORCID 0000-0002-1983-4588
David C MolikArthropod-borne Animal Diseases Research Unit, Center for Grain and Animal Health Research United States Department of Agriculture, Agricultural Research Service, 1515 College Ave, Manhattan, KS 66502 USA.ORCID 0000-0003-3192-6538

Funding

WormBase: a core data resource for C. elegans and other nematodesU24HG002223 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI TIM SCHEDL, PAUL Warren STERNBERG · 2018 to 2026
$18.9M
NHGRI NIH HHS U24 HG002223
6 · The paper itself

Abstract

The lack of interoperable data standards among reference genome data-sharing platforms inhibits cross-platform analysis while increasing the risk of data provenance loss. Here, we describe the FAIR-bioHeaders Reference genome (FHR), a metadata standard guided by the principles of Findability, Accessibility, Interoperability, and Reuse (FAIR) in addition to the principles of Transparency, Responsibility, User focus, Sustainability, and Technology (TRUST). The objective of FHR is to provide an extensive set of data serialisation methods and minimum data field requirements while still maintaining extensibility, flexibility, and expressivity in an increasingly decentralised genomic data ecosystem. The effort needed to implement FHR is low; FHR's design philosophy ensures easy implementation while retaining the benefits gained from recording both machine and human-readable provenance.

Identifiers

PMID38076838
PMCPMC10705436

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.