Evidence map›Paper›PMID 38073574›Full record

ArticleStatistical applications in genetics and molecular biology2023

When is the allele-sharing dissimilarity between two populations exceeded by the allele-sharing dissimilarity of a population with itself?

Xiran Liu, Zarif Ahsan, Tarun K Martheswaran, Noah A Rosenberg

Abstract read
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Article in Statistical applications in genetics and molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Xiran LiuInstitute for Computational and Mathematical Engineering, Stanford University, Stanford, CA 94305, USA.
Zarif AhsanDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Tarun K MartheswaranDepartment of Biology, Stanford University, Stanford, CA 94305, USA.
Noah A RosenbergDepartment of Biology, Stanford University, Stanford, CA 94305, USA.

Funding

Population genetics for large-scale sequencing studies of diverse populationsR01HG005855 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Noah Rosenberg, Paul A Scheet · 2010 to 2026
$5.8M
NHGRI NIH HHS R01 HG005855
6 · The paper itself

Abstract

Allele-sharing statistics for a genetic locus measure the dissimilarity between two populations as a mean of the dissimilarity between random pairs of individuals, one from each population. Owing to within-population variation in genotype, allele-sharing dissimilarities can have the property that they have a nonzero value when computed between a population and itself. We consider the mathematical properties of allele-sharing dissimilarities in a pair of populations, treating the allele frequencies in the two populations parametrically. Examining two formulations of allele-sharing dissimilarity, we obtain the distributions of within-population and between-population dissimilarities for pairs of individuals. We then mathematically explore the scenarios in which, for certain allele-frequency distributions, the within-population dissimilarity - the mean dissimilarity between randomly chosen members of a population - can exceed the dissimilarity between two populations. Such scenarios assist in explaining observations in population-genetic data that members of a population can be empirically more genetically dissimilar from each other on average than they are from members of another population. For a population pair, however, the mathematical analysis finds that at least one of the two populations always possesses smaller within-population dissimilarity than the value of the between-population dissimilarity. We illustrate the mathematical results with an application to human population-genetic data.

Indexed as

Genetics, PopulationAllelesGene FrequencyGenotypeHumansallele-sharinggenetic dissimilaritypopulation genetics

Identifiers

PMID38073574
PMCPMC10711674

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.