Evidence map›Paper›PMID 38071370›Full record

ArticleNature communications2023

The DNA glycosylase NEIL2 is protective during SARS-CoV-2 infection.

Nisha Tapryal, Anirban Chakraborty, Kaushik Saha, Azharul Islam, Lang Pan, Koa Hosoki, Ibrahim M Sayed, Jason M Duran, Joshua Alcantara, Vanessa Castillo and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 2 countries.

Nisha Tapryal *Department of Internal Medicine, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Anirban Chakraborty *Department of Internal Medicine, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Kaushik SahaDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, 92037, USA.ORCID 0000-0003-1574-2309
Azharul IslamDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Lang PanDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Koa HosokiDepartment of Medicine, Immunology Allergy and Rheumatology, Baylor College of Medicine, Houston, TX, 77030, USA.
Ibrahim M SayedDepartment of Pathology, University of California, San Diego, CA, 92093, USA.
Jason M DuranDepartment of Internal Medicine, Division of Cardiology, UC San Diego Medical Center, La Jolla, CA, 92037, USA.
Joshua AlcantaraDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, 92093, USA.ORCID 0000-0002-7970-8970
Vanessa CastilloDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Courtney TindleDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Altaf H SarkerDepartment of Cancer and DNA Damage Responses, Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.ORCID 0000-0001-6868-8460
Maki WakamiyaDepartment of Neurology, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Victor J CardenasDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Gulshan SharmaDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX, 77555, USA.
Laura E Crotty AlexanderDepartment of Medicine, University of California, San Diego, CA, 92093, USA.ORCID 0000-0002-5091-2660
Sanjiv SurDepartment of Medicine, Immunology Allergy and Rheumatology, Baylor College of Medicine, Houston, TX, 77030, USA.
Debashis SahooDepartment of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA. dsahoo@ucsd.edu.ORCID 0000-0003-2329-8228
Gourisankar GhoshDepartment of Chemistry and Biochemistry, University of California, San Diego, La Jolla, CA, 92037, USA. gghosh@ucsd.edu.ORCID 0000-0001-6311-7351
Soumita DasDepartment of Pathology, University of California, San Diego, CA, 92093, USA. sodas@ucsd.edu.
Pradipta GhoshDepartment of Cellular and Molecular Medicine, University of California San Diego, La Jolla, CA, 92093, USA. prghosh@ucsd.edu.ORCID 0000-0002-8917-3201
Istvan BoldoghDepartment of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX, 77555, USA. sboldogh@utmb.edu.
Tapas K HazraDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, TX, 77555, USA. tkhazra@utmb.edu.ORCID 0000-0002-4587-687X
The University of Texas Medical Branch at Galveston · USUniversity of California San Diego · USBaylor College of Medicine · USUniversity of Massachusetts Lowell · USLawrence Berkeley National Laboratory · US

Funding

Virus, Tissue Culture and ImmunoassayP01AI062885 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CASOLA, ANTONELLA · 2005 to 2022
$23.9M
Macrophage Polarization in Response to Infections and InflammationR01AI155696 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA, SAHOO, DEBASHIS · 2020 to 2024
$4.9M
Investigation of Gene Regulation by NF-kappaB Transcription factorsR01GM085490 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, GOURISANKAR · 2009 to 2023
$3.8M
Role of Cytosolic DNA-multiprotein Interactome in Allergic Airway InflammationR01HL145477 · NHLBI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K, SUR, SANJIV · 2019 to 2022
$3.6M
Preferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3M
Modulation of Macrophage Polarization by Heterotrimeric G proteins: Implications of Gastrointestinal InflammationR01AI141630 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Pradipta Ghosh · 2019 to 2026
$3.2M
Suppressing Inflammation by Blocking IKK OligomerR01AI163327 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GOURISANKAR GHOSH · 2022 to 2026
$2.6M
Innate responses following infection with enteric microbesR01DK107585 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAS, SOUMITA · 2016 to 2020
$2.2M
Summer Student Research on the Application of Boolean AnalysisR01GM138385 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SAHOO, DEBASHIS · 2020 to 2023
$2.0M
DNA double strand break repair deficiency and neurodegenerationR56NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2024 to 2024
$536k
NHLBI NIH HHS R01 HL145477NIAID NIH HHS P01 AI062885NIAID NIH HHS R01 AI141630NIAID NIH HHS R01 AI155696NIAID NIH HHS R01 AI163327NIDDK NIH HHS R01 DK107585NIGMS NIH HHS R01 GM085490NIGMS NIH HHS R01 GM138385NINDS NIH HHS R01 NS073976NINDS NIH HHS R56 NS073976U.S. Department of Defense W81XWH-18-1-0743
6 · The paper itself

Abstract

SARS-CoV-2 infection-induced aggravation of host innate immune response not only causes tissue damage and multiorgan failure in COVID-19 patients but also induces host genome damage and activates DNA damage response pathways. To test whether the compromised DNA repair capacity of individuals modulates the severity of COVID-19 infection, we analyze DNA repair gene expression in publicly available patient datasets and observe a lower level of the DNA glycosylase NEIL2 in the lungs of severely infected COVID-19 patients. This observation of lower NEIL2 levels is further validated in infected patients, hamsters and ACE2 receptor-expressing human A549 (A549-ACE2) cells. Furthermore, delivery of recombinant NEIL2 in A549-ACE2 cells shows decreased expression of proinflammatory genes and viral E-gene, as well as lowers the yield of viral progeny compared to mock-treated cells. Mechanistically, NEIL2 cooperatively binds to the 5'-UTR of SARS-CoV-2 genomic RNA to block viral protein synthesis. Collectively, these data strongly suggest that the maintenance of basal NEIL2 levels is critical for the protective response of hosts to viral infection and disease.

Indexed as

COVID-19DNA GlycosylasesAngiotensin-Converting Enzyme 2AnimalsCricetinaeDNA-(Apurinic or Apyrimidinic Site) LyaseGenomeHumansSARS-CoV-2Angiotensin-Converting Enzyme 2DNA-(Apurinic or Apyrimidinic Site) LyaseDNA GlycosylasesNEIL2 protein, human

Identifiers

PMID38071370
PMCPMC10710473
OpenAlexW4389506166

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.