Evidence map›Paper›PMID 38071343›Full record

ArticleNPJ precision oncology2023

Promoter swapping of truncated PDGFRB drives Ph-like acute lymphoblastic leukemia.

Bunpei Miyazaki, Toshihide Ueno, Masanaka Sugiyama, Shinya Kojima, Ayumu Arakawa, Kayoko Tao, Kazuki Tanimura, Kouya Shiraishi, Shigehiro Yagishita, Shinji Kohsaka and 8 more

Open access · goldAbstract read
In one paragraph

Article in NPJ precision oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.5field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. [Clinical analysis of 7 cases of childhood acute lymphoblastic leukemia withZhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2026
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 1 country.

Bunpei MiyazakiDepartment of Pediatric Oncology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.
Toshihide UenoDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0002-7408-7298
Masanaka SugiyamaDepartment of Pediatric Oncology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0003-0691-0331
Shinya KojimaDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.
Ayumu ArakawaDepartment of Pediatric Oncology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.
Kayoko TaoDepartment of Pediatric Oncology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.
Kazuki TanimuraDepartment of Pediatric Oncology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0002-7105-9224
Kouya ShiraishiDepartment of Clinical Genomics, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.
Shigehiro YagishitaDivision of Molecular Pharmacology, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.
Shinji KohsakaDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0001-8651-6136
Mamoru KatoDivision of Bioinformatics, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0002-8485-8316
Nobutaka KiyokawaDepartment of Pediatric Hematology and Oncology Research, National Research Institute for Child Health and Development, Tokyo, 157-0074, Japan.ORCID http://orcid.org/0000-0001-9310-2126
Yasushi GotoDepartment of Thoracic Oncology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.
Yasushi YatabeDepartment of Diagnostic Pathology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0003-1788-559X
Akinobu HamadaDivision of Molecular Pharmacology, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.
Hiroyuki ManoDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, 104-0045, Japan.ORCID http://orcid.org/0000-0003-4645-0181
Chitose OgawaDepartment of Pediatric Oncology, National Cancer Center Hospital, Tokyo, 104-0045, Japan.
Yosuke TanakaDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, 104-0045, Japan. yotanaka@ncc.go.jp.ORCID http://orcid.org/0000-0002-3764-0517
National Cancer Centre Japan · JPNational Center For Child Health and Development · JPTokyo National Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Philadelphia chromosome (Ph)-like acute lymphoblastic leukemia (ALL) is a subset of ALL that demonstrated a high treatment failure rate. One of the hallmarks of Ph-like ALL is PDGFRB gene fusion, with fusion partner proteins often harboring dimerization domains and enhancing the kinase activity of PDGFRB. We determined a novel oncogenic PDGFRB fusion gene, NRIP1::PDGFRB, from a pediatric patient with ALL, encoding a protein with the carboxy-terminal kinase domain of PDGFRB, without the partner peptide. We confirmed the oncogenic potential of NRIP1::PDGFRB in vitro and the efficacy of all ABL1-specific inhibitor generations, including imatinib, dasatinib, nilotinib, and ponatinib, in suppressing this potential. PDGFRB activation mechanism may include juxtamembrane domain truncation in the predicted peptide. In conclusion, we determined a novel fusion gene pattern in Ph-like ALL.

Identifiers

PMID38071343
PMCPMC10710492
OpenAlexW4389506027

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.