Evidence map›Paper›PMID 38071325›Full record

ArticleJournal of biomedical science2023

ARID1A loss activates MAPK signaling via DUSP4 downregulation.

Jayaprakash Mandal, Zheng-Cheng Yu, Ie-Ming Shih, Tian-Li Wang

Open access · diamondAbstract read
In one paragraph

Article in Journal of biomedical science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Targeting WEE1 to Overcome ARID1A Mutation-Driven Osimertinib Resistance in EGFR-Mutant Lung Cancer.Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer · 2025
    Article
  6. Integrated Spatial Analysis of Ovarian Precancerous Lesions.bioRxiv : the preprint server for biology · 2025
    Article
  7. Role of signaling pathways in endometrial cancer.Molecular biology reports · 2025
    Review
  8. Article
  9. Article
  10. A mutational signature and ARID1A mutation associated with outcome in hepatocellular carcinoma.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2025
    Article
  11. Signaling pathways and advances in targeted therapy for adenomyosis.Frontiers in cell and developmental biology · 2025
    Review
  12. Frontiers in microbiology · 2025
    Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jayaprakash Mandal *Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Zheng-Cheng Yu *Department of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA.
Ie-Ming ShihDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA. ishih@jhmi.edu.
Tian-Li WangDepartment of Pathology, Johns Hopkins University School of Medicine, Baltimore, MD, USA. tlw@jhmi.edu.ORCID http://orcid.org/0000-0002-7082-449X
Johns Hopkins University · US

Funding

SPORE in Ovarian CancerP50CA228991 · NCI · JOHNS HOPKINS UNIVERSITY · PI Tian-Li Wang · 2018 to 2026
$20.5M
Development of a low-cost epigenetic screening assay for Pap specimen-based detection of early-stage ovarian cancer in high-risk womenR01CA260628 · NCI · JOHNS HOPKINS UNIVERSITY · PI PISANIC II, THOMAS RUSSELL, SHIH, IE-MING · 2021 to 2025
$2.1M
Experimental Therapeutics by targeting Spleen Tyrosine KinaseR01CA215483 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2017 to 2021
$1.9M
Tumor Suppressor Role of ARID1AR21CA165807 · NCI · JOHNS HOPKINS UNIVERSITY · PI SHIH, IE-MING · 2012 to 2013
$375k
NCI NIH HHS P50 CA228991NCI NIH HHS R01 CA215483NCI NIH HHS R01 CA260628NCI NIH HHS R21 CA165807NIH HHS P50CA228991NIH HHS R01CA215483NIH HHS R01CA260628NIH HHS R21CA165807
6 · The paper itself

Abstract

backgroundARID1A, a tumor suppressor gene encoding BAF250, a protein participating in chromatin remodeling, is frequently mutated in endometrium-related malignancies, including ovarian or uterine clear cell carcinoma (CCC) and endometrioid carcinoma (EMCA). However, how ARID1A mutations alter downstream signaling to promote tumor development is yet to be established.

methodsWe used RNA-sequencing (RNA-seq) to explore transcriptomic changes in isogenic human endometrial epithelial cells after deleting ARID1A. Chromatin immunoprecipitation sequencing (ChIP-seq) was employed to assess the active or repressive histone marks on DUSP4 promoter and regulatory regions. We validated our findings using genetically engineered murine endometroid carcinoma models, human endometroid carcinoma tissues, and in silico approaches.

resultsRNA-seq revealed the downregulation of the MAPK phosphatase dual-specificity phosphatase 4 (DUSP4) in ARID1A-deficient cells. ChIP-seq demonstrated decreased histone acetylation marks (H3K27Ac, H3K9Ac) on DUSP4 regulatory regions as one of the causes for DUSP4 downregulation in ARID1A-deficient cells. Ectopic DUSP4 expression decreased cell proliferation, and pharmacologically inhibiting the MAPK pathway significantly mitigated tumor formation in vivo.

conclusionsOur findings suggest that ARID1A protein transcriptionally modulates DUSP4 expression by remodeling chromatin, subsequently inactivating the MAPK pathway, leading to tumor suppression. The ARID1A-DUSP4-MAPK axis may be further considered for developing targeted therapies against ARID1A-mutated cancers.

Indexed as

Carcinoma, EndometrioidNuclear ProteinsAnimalsDNA-Binding ProteinsDown-RegulationDual-Specificity PhosphatasesFemaleHumansMiceMitogen-Activated Protein Kinase PhosphatasesTranscription FactorsARID1A protein, humanDNA-Binding ProteinsDual-Specificity PhosphatasesDUSP4 protein, humanMitogen-Activated Protein Kinase PhosphatasesNuclear ProteinsTranscription FactorsARID1AChromatin remodelingDUSP4MAPKTherapeutics

Identifiers

PMID38071325
PMCPMC10709884
OpenAlexW4389509366

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.